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3
votes
3
replies
1.1k
views
WGCNA: many over and under-expressed features in modules of a signed network
WGCNA
updated 22 months ago by 3.8k • written 22 months ago by ▴ 350
5
votes
2
replies
2.2k
views
LIMMA: where to find the ANOVA?
bioconductor LIMMA R
23 months ago by Sebastian Hesse ▴ 350
0
votes
0
replies
646
views
Input data for LIMMA: unnormalised or vsn or other?
limma normalisation
updated 13 months ago by 45k • written 2.1 years ago by ▴ 350
0
votes
0
replies
880
views
ANOVA and TUKEYs post-test for 3 groups in R
R expression
updated 4.2 years ago by 87k • written 4.2 years ago by ▴ 350
2
votes
1
reply
1.8k
views
Correlating metadata with expression based k-means cluster (in R)
R k-means clustering
updated 4.4 years ago by ★ 3.0k • written 4.6 years ago by ▴ 350
1
vote
2
replies
2.5k
views
Data processing order: normalisation or batch effect correction first?
limma proteome batch-effect R
updated 11 months ago by 45k • written 4.4 years ago by ▴ 350
75
votes
10
replies
165k
views
6 follow
Fold change - a final explanation
RNA-Seq
updated 4.6 years ago by ▴ 10 • written 6.5 years ago by ▴ 350
8
votes
9
replies
2.9k
views
Usage of selectLab in PCAtools, R
R PCAtools
4.8 years ago by Sebastian Hesse ▴ 350
0
votes
1
reply
973
views
Weights in normalizeCyclicLoess (Limma, R)
R limma normalizeCyclicLoess
4.9 years ago by Sebastian Hesse ▴ 350
4
votes
7
replies
6.9k
views
Selecting the background for GO enrichment analysis (proteomics)
GO enrichment proteomics clusterProfiler
updated 4.9 years ago by • 0 • written 5.9 years ago by ▴ 350
1
vote
2
replies
2.7k
views
Design matrix for voom: with or without batch blocking?
r voom limma proteomics
updated 5.2 years ago by ★ 7.8k • written 6.2 years ago by ▴ 350
1
vote
2
replies
2.5k
views
How to correctly correct for batch effects
r removeBatchEffect LIMMA PVCA
updated 5.2 years ago by 20 • written 6.1 years ago by ▴ 350
3
votes
4
replies
6.1k
views
Using clusterprofiler (or else) top look for enrichment of one specific GO term
r clusterprofiler bioconductor enrichment
updated 5.4 years ago by • 0 • written 6.0 years ago by ▴ 350
0
votes
4
replies
9.7k
views
PVCA message: boundary (singular) fit: see ?isSingular
pvca r
6.0 years ago by Sebastian Hesse ▴ 350
7
votes
5
replies
6.6k
views
removeBatchEffect with or without log2 values
removeBatchEffect limma r
6.1 years ago by Sebastian Hesse ▴ 350
1
vote
0
replies
812
views
Conditions for valid batch effect correction
r batch-effect
updated 11 months ago by 45k • written 6.1 years ago by ▴ 350
5
votes
5
replies
2.1k
views
Interpretation of linear modelling quality test
r statistics proteomics
6.2 years ago by Sebastian Hesse ▴ 350
0
votes
2
replies
3.9k
views
ComBat correction with one batch containing only one sample - keep or remove?
combat sva proteome R
updated 6.2 years ago by 20 • written 6.4 years ago by ▴ 350
3
votes
5
replies
3.1k
views
LIMMA analysis with 2 samples in comparison group
limma r proteomics
6.2 years ago by Sebastian Hesse ▴ 350
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