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3
votes
4
replies
5.1k
views
Can't change coefficient of dds object: error 'coef' should specify same coefficient as in results 'res'
DESeq2 RNA-seq
3.6 years ago by macielrodriguez2 ▴ 50
0
votes
2
replies
879
views
Remove part of the header from multi-fasta file (another one)
gene sequence fasta
updated 4.9 years ago by 12k • written 4.9 years ago by ▴ 50
6
votes
2
replies
2.0k
views
Why map reads back to assembly?
assembly sequence next-gen alignment Assembly
5.0 years ago by macielrodriguez2 ▴ 50
0
votes
0
replies
924
views
Meaning of these k-mer diagrams
assembly alignment kmer jellyfish
5.3 years ago by macielrodriguez2 ▴ 50
0
votes
0
replies
1.1k
views
How to use IMAGE2 (Iterative Mapping And Assembly For Gap Elimination), recommendations of other gap filling tools
assembly next-gen
5.3 years ago by macielrodriguez2 ▴ 50
0
votes
0
replies
1.2k
views
Chloroplast and mithocondria genome assembly with SPAdes and Tadpole, correct coverage and kmers
assembly genome next-gen sequence alignment
5.3 years ago by macielrodriguez2 ▴ 50
2
votes
3
replies
1.1k
views
Extract reads from a bam file to have two fastq files with the same number of reads
alignment genome sequencing assembly
updated 5.3 years ago by 147k • written 5.3 years ago by ▴ 50
0
votes
0
replies
966
views
Filtering BAM file to extract PE reads that mapped as proper pairs, including PE reads that did not map, but their mate did
assembly alignment next-gen
updated 5.3 years ago by 16k • written 5.3 years ago by ▴ 50
1
vote
0
replies
830
views
How to know if the orientation of a fragment in a genome assembly is correct
Assembly genome chloroplast genome
5.4 years ago by macielrodriguez2 ▴ 50
4
votes
7
replies
2.5k
views
How to extract only the alignments to the chloroplast reference genome of a sam file
genome alignment next-gen Assembly
updated 5.5 years ago by 85k • written 5.5 years ago by ▴ 50
0
votes
5
replies
1.6k
views
Abyss, Optimizing the parameter k, running time taking 7 days, still without results
Assembly zea mays
5.7 years ago by macielrodriguez2 ▴ 50
2
votes
4
replies
1.9k
views
problem with Abyss assembler - cma-permission-denied
assembly
5.7 years ago by macielrodriguez2 ▴ 50
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