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Comment: Comment: Single Gene Orthologs
9 months ago by macielrodriguez2 ▴ 40
0
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0
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7.9k
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Comment: Comment: Single Gene Orthologs
9 months ago by macielrodriguez2 ▴ 40
0
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0
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2.9k
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Comment: Comment: Can't change coefficient of dds object: error 'coef' should specify same coeffic
23 months ago by macielrodriguez2 ▴ 40
0
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1
reply
2.9k
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Comment: Comment: Can't change coefficient of dds object: error 'coef' should specify same coeffic
23 months ago by macielrodriguez2 ▴ 40
3
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4
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2.9k
views
Can't change coefficient of dds object: error 'coef' should specify same coefficient as in results 'res'
DESeq2 RNA-seq
23 months ago by macielrodriguez2 ▴ 40
1
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0
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5.4k
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Comment: C: Converting MUMmer snps file to a real VCF file
3.3 years ago by macielrodriguez2 ▴ 40
0
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2
replies
581
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Remove part of the header from multi-fasta file (another one)
gene sequence fasta
updated 3.3 years ago by 11k • written 3.3 years ago by ▴ 40
6
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2
replies
1.5k
views
Why map reads back to assembly?
assembly sequence next-gen alignment Assembly
3.4 years ago by macielrodriguez2 ▴ 40
0
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0
replies
707
views
Meaning of these k-mer diagrams
assembly alignment kmer jellyfish
3.7 years ago by macielrodriguez2 ▴ 40
0
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0
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849
views
How to use IMAGE2 (Iterative Mapping And Assembly For Gap Elimination), recommendations of other gap filling tools
assembly next-gen
3.7 years ago by macielrodriguez2 ▴ 40
0
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0
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892
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Chloroplast and mithocondria genome assembly with SPAdes and Tadpole, correct coverage and kmers
assembly genome next-gen sequence alignment
3.7 years ago by macielrodriguez2 ▴ 40
0
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0
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4.2k
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Comment: C: Using SPAdes for assembling mitochondrial and viral genomes
3.7 years ago by macielrodriguez2 ▴ 40
0
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0
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5.5k
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Comment: Comment: Extending ends of sequences with the help of reads?
updated 3 months ago by 38k • written 3.7 years ago by ▴ 40
0
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1
reply
850
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Comment: C: Extract reads from a bam file to have two fastq files with the same number of re
3.7 years ago by macielrodriguez2 ▴ 40
2
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3
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850
views
Extract reads from a bam file to have two fastq files with the same number of reads
alignment genome sequencing assembly
updated 3.7 years ago by 127k • written 3.7 years ago by ▴ 40
0
votes
0
replies
765
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Filtering BAM file to extract PE reads that mapped as proper pairs, including PE reads that did not map, but their mate did
assembly alignment next-gen
updated 3.7 years ago by 16k • written 3.7 years ago by ▴ 40
0
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0
replies
2.0k
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Comment: C: Inverse mutation: Is Mummer output conclusive proof of inversion
3.7 years ago by macielrodriguez2 ▴ 40
0
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0
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74k
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Comment: C: Selecting Random Pairs From Fastq?
3.7 years ago by macielrodriguez2 ▴ 40
0
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0
replies
1.5k
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Comment: C: Need help using ABACAS
3.8 years ago by macielrodriguez2 ▴ 40
1
vote
0
replies
636
views
How to know if the orientation of a fragment in a genome assembly is correct
Assembly genome chloroplast genome
3.8 years ago by macielrodriguez2 ▴ 40
0
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1
reply
74k
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Comment: C: Selecting Random Pairs From Fastq?
3.8 years ago by macielrodriguez2 ▴ 40
0
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1
reply
74k
views
Comment: C: Selecting Random Pairs From Fastq?
3.8 years ago by macielrodriguez2 ▴ 40
0
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0
replies
214k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
3.8 years ago by macielrodriguez2 ▴ 40
0
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1
reply
214k
views
Comment: C: Tools To Calculate Average Coverage For A Bam File?
3.9 years ago by macielrodriguez2 ▴ 40
0
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0
replies
214k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
3.9 years ago by macielrodriguez2 ▴ 40
0
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0
replies
214k
views
Comment: C: Tools To Calculate Average Coverage For A Bam File?
3.9 years ago by macielrodriguez2 ▴ 40
0
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0
replies
3.5k
views
Comment: C: samtools flagstat result is different from samtools view result
3.9 years ago by macielrodriguez2 ▴ 40
0
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1
reply
3.5k
views
Comment: A: samtools flagstat result is different from samtools view result
3.9 years ago by macielrodriguez2 ▴ 40
0
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0
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2.0k
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Comment: C: Using the same reads to assemble mitochondria and chloroplast genomes
3.9 years ago by macielrodriguez2 ▴ 40
0
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1
reply
1.9k
views
Comment: C: How to extract only the alignments to the chloroplast reference genome of a sam
3.9 years ago by macielrodriguez2 ▴ 40
0
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0
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1.9k
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Comment: C: How to extract only the alignments to the chloroplast reference genome of a sam
3.9 years ago by macielrodriguez2 ▴ 40
4
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7
replies
1.9k
views
How to extract only the alignments to the chloroplast reference genome of a sam file
genome alignment next-gen Assembly
updated 3.9 years ago by 71k • written 3.9 years ago by ▴ 40
0
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1
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1.1k
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Comment: C: Abyss, Optimizing the parameter k, running time taking 7 days, still without res
4.1 years ago by macielrodriguez2 ▴ 40
0
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5
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1.1k
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Abyss, Optimizing the parameter k, running time taking 7 days, still without results
Assembly zea mays
4.1 years ago by macielrodriguez2 ▴ 40
2
votes
4
replies
1.5k
views
problem with Abyss assembler - cma-permission-denied
assembly
4.1 years ago by macielrodriguez2 ▴ 40
0
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0
replies
1.5k
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Comment: C: problem with Abyss assembler - cma-permission-denied
4.1 years ago by macielrodriguez2 ▴ 40
0
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0
replies
1.5k
views
Comment: C: problem with Abyss assembler - cma-permission-denied
4.1 years ago by macielrodriguez2 ▴ 40
37 results • Page 1 of 1
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