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Comment: Comment: Single Gene Orthologs
17 months ago by macielrodriguez2 ▴ 50
0
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0
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8.6k
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Comment: Comment: Single Gene Orthologs
17 months ago by macielrodriguez2 ▴ 50
0
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0
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3.8k
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Comment: Comment: Can't change coefficient of dds object: error 'coef' should specify same coeffic
2.6 years ago by macielrodriguez2 ▴ 50
0
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1
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3.8k
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Comment: Comment: Can't change coefficient of dds object: error 'coef' should specify same coeffic
2.6 years ago by macielrodriguez2 ▴ 50
3
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4
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3.8k
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Can't change coefficient of dds object: error 'coef' should specify same coefficient as in results 'res'
DESeq2 RNA-seq
2.6 years ago by macielrodriguez2 ▴ 50
1
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0
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6.4k
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Comment: C: Converting MUMmer snps file to a real VCF file
4.0 years ago by macielrodriguez2 ▴ 50
0
votes
2
replies
696
views
Remove part of the header from multi-fasta file (another one)
gene sequence fasta
updated 4.0 years ago by 11k • written 4.0 years ago by ▴ 50
6
votes
2
replies
1.7k
views
Why map reads back to assembly?
assembly sequence next-gen alignment Assembly
4.0 years ago by macielrodriguez2 ▴ 50
0
votes
0
replies
788
views
Meaning of these k-mer diagrams
assembly alignment kmer jellyfish
4.3 years ago by macielrodriguez2 ▴ 50
0
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0
replies
955
views
How to use IMAGE2 (Iterative Mapping And Assembly For Gap Elimination), recommendations of other gap filling tools
assembly next-gen
4.3 years ago by macielrodriguez2 ▴ 50
0
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0
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1.0k
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Chloroplast and mithocondria genome assembly with SPAdes and Tadpole, correct coverage and kmers
assembly genome next-gen sequence alignment
4.3 years ago by macielrodriguez2 ▴ 50
0
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0
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4.6k
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Comment: C: Using SPAdes for assembling mitochondrial and viral genomes
4.3 years ago by macielrodriguez2 ▴ 50
0
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0
replies
5.9k
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Comment: Comment: Extending ends of sequences with the help of reads?
updated 11 months ago by 41k • written 4.3 years ago by ▴ 50
0
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1
reply
954
views
Comment: C: Extract reads from a bam file to have two fastq files with the same number of re
4.4 years ago by macielrodriguez2 ▴ 50
2
votes
3
replies
954
views
Extract reads from a bam file to have two fastq files with the same number of reads
alignment genome sequencing assembly
updated 4.4 years ago by 136k • written 4.4 years ago by ▴ 50
0
votes
0
replies
835
views
Filtering BAM file to extract PE reads that mapped as proper pairs, including PE reads that did not map, but their mate did
assembly alignment next-gen
updated 4.4 years ago by 16k • written 4.4 years ago by ▴ 50
0
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0
replies
2.3k
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Comment: C: Inverse mutation: Is Mummer output conclusive proof of inversion
4.4 years ago by macielrodriguez2 ▴ 50
0
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0
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82k
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Comment: C: Selecting Random Pairs From Fastq?
4.4 years ago by macielrodriguez2 ▴ 50
0
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0
replies
1.6k
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Comment: C: Need help using ABACAS
4.4 years ago by macielrodriguez2 ▴ 50
1
vote
0
replies
710
views
How to know if the orientation of a fragment in a genome assembly is correct
Assembly genome chloroplast genome
4.4 years ago by macielrodriguez2 ▴ 50
1
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1
reply
82k
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Comment: C: Selecting Random Pairs From Fastq?
4.4 years ago by macielrodriguez2 ▴ 50
0
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1
reply
82k
views
Comment: C: Selecting Random Pairs From Fastq?
4.4 years ago by macielrodriguez2 ▴ 50
0
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0
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230k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
4.5 years ago by macielrodriguez2 ▴ 50
0
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1
reply
230k
views
Comment: C: Tools To Calculate Average Coverage For A Bam File?
4.5 years ago by macielrodriguez2 ▴ 50
0
votes
0
replies
230k
views
Comment: C: Tools To Calculate Average Coverage For A Bam File?
4.5 years ago by macielrodriguez2 ▴ 50
0
votes
0
replies
230k
views
Comment: C: Tools To Calculate Average Coverage For A Bam File?
4.5 years ago by macielrodriguez2 ▴ 50
0
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0
replies
3.7k
views
Comment: C: samtools flagstat result is different from samtools view result
4.5 years ago by macielrodriguez2 ▴ 50
0
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1
reply
3.7k
views
Comment: A: samtools flagstat result is different from samtools view result
4.5 years ago by macielrodriguez2 ▴ 50
0
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0
replies
2.2k
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Comment: C: Using the same reads to assemble mitochondria and chloroplast genomes
4.6 years ago by macielrodriguez2 ▴ 50
0
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1
reply
2.1k
views
Comment: C: How to extract only the alignments to the chloroplast reference genome of a sam
4.6 years ago by macielrodriguez2 ▴ 50
0
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0
replies
2.1k
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Comment: C: How to extract only the alignments to the chloroplast reference genome of a sam
4.6 years ago by macielrodriguez2 ▴ 50
4
votes
7
replies
2.1k
views
How to extract only the alignments to the chloroplast reference genome of a sam file
genome alignment next-gen Assembly
updated 4.6 years ago by 78k • written 4.6 years ago by ▴ 50
0
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1
reply
1.3k
views
Comment: C: Abyss, Optimizing the parameter k, running time taking 7 days, still without res
4.7 years ago by macielrodriguez2 ▴ 50
0
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5
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1.3k
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Abyss, Optimizing the parameter k, running time taking 7 days, still without results
Assembly zea mays
4.7 years ago by macielrodriguez2 ▴ 50
2
votes
4
replies
1.6k
views
problem with Abyss assembler - cma-permission-denied
assembly
4.8 years ago by macielrodriguez2 ▴ 50
0
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0
replies
1.6k
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Comment: C: problem with Abyss assembler - cma-permission-denied
4.8 years ago by macielrodriguez2 ▴ 50
0
votes
0
replies
1.6k
views
Comment: C: problem with Abyss assembler - cma-permission-denied
4.8 years ago by macielrodriguez2 ▴ 50
37 results • Page 1 of 1
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