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Comment: Comment: Single Gene Orthologs
3.2 years ago by macielrodriguez2 ▴ 50
0
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0
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11k
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Comment: Comment: Single Gene Orthologs
3.2 years ago by macielrodriguez2 ▴ 50
0
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0
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6.4k
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Comment: Comment: Can't change coefficient of dds object: error 'coef' should specify same coeffic
4.4 years ago by macielrodriguez2 ▴ 50
0
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1
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6.4k
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Comment: Comment: Can't change coefficient of dds object: error 'coef' should specify same coeffic
4.4 years ago by macielrodriguez2 ▴ 50
3
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4
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6.4k
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Can't change coefficient of dds object: error 'coef' should specify same coefficient as in results 'res'
DESeq2 RNA-seq
4.4 years ago by macielrodriguez2 ▴ 50
1
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0
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9.2k
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Comment: C: Converting MUMmer snps file to a real VCF file
5.8 years ago by macielrodriguez2 ▴ 50
0
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2
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1.1k
views
Remove part of the header from multi-fasta file (another one)
gene sequence fasta
updated 5.8 years ago by 12k • written 5.8 years ago by ▴ 50
6
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2
replies
2.3k
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Why map reads back to assembly?
assembly sequence next-gen alignment Assembly
5.9 years ago by macielrodriguez2 ▴ 50
0
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0
replies
1.1k
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Meaning of these k-mer diagrams
assembly alignment kmer jellyfish
6.1 years ago by macielrodriguez2 ▴ 50
0
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0
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1.2k
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How to use IMAGE2 (Iterative Mapping And Assembly For Gap Elimination), recommendations of other gap filling tools
assembly next-gen
6.1 years ago by macielrodriguez2 ▴ 50
0
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0
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1.3k
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Chloroplast and mithocondria genome assembly with SPAdes and Tadpole, correct coverage and kmers
assembly genome next-gen sequence alignment
6.1 years ago by macielrodriguez2 ▴ 50
0
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0
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5.6k
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Comment: C: Using SPAdes for assembling mitochondrial and viral genomes
6.1 years ago by macielrodriguez2 ▴ 50
0
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0
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7.7k
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Comment: Comment: Extending ends of sequences with the help of reads?
updated 2.8 years ago by 45k • written 6.2 years ago by ▴ 50
0
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1
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1.4k
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Comment: C: Extract reads from a bam file to have two fastq files with the same number of re
6.2 years ago by macielrodriguez2 ▴ 50
2
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3
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1.4k
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Extract reads from a bam file to have two fastq files with the same number of reads
alignment genome sequencing assembly
updated 6.2 years ago by 153k • written 6.2 years ago by ▴ 50
0
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0
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1.1k
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Filtering BAM file to extract PE reads that mapped as proper pairs, including PE reads that did not map, but their mate did
assembly alignment next-gen
updated 6.2 years ago by 16k • written 6.2 years ago by ▴ 50
0
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0
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3.2k
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Comment: C: Inverse mutation: Is Mummer output conclusive proof of inversion
6.2 years ago by macielrodriguez2 ▴ 50
0
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0
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103k
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Comment: C: Selecting Random Pairs From Fastq?
6.2 years ago by macielrodriguez2 ▴ 50
0
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0
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2.1k
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Comment: C: Need help using ABACAS
6.2 years ago by macielrodriguez2 ▴ 50
1
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0
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945
views
How to know if the orientation of a fragment in a genome assembly is correct
Assembly genome chloroplast genome
6.2 years ago by macielrodriguez2 ▴ 50
1
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1
reply
103k
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Comment: C: Selecting Random Pairs From Fastq?
6.3 years ago by macielrodriguez2 ▴ 50
0
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1
reply
103k
views
Comment: C: Selecting Random Pairs From Fastq?
6.3 years ago by macielrodriguez2 ▴ 50
0
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0
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267k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
6.3 years ago by macielrodriguez2 ▴ 50
0
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1
reply
267k
views
Comment: C: Tools To Calculate Average Coverage For A Bam File?
6.3 years ago by macielrodriguez2 ▴ 50
0
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0
replies
267k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
6.3 years ago by macielrodriguez2 ▴ 50
0
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0
replies
267k
views
Comment: C: Tools To Calculate Average Coverage For A Bam File?
6.3 years ago by macielrodriguez2 ▴ 50
0
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0
replies
4.5k
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Comment: C: samtools flagstat result is different from samtools view result
6.3 years ago by macielrodriguez2 ▴ 50
0
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1
reply
4.5k
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Comment: A: samtools flagstat result is different from samtools view result
6.3 years ago by macielrodriguez2 ▴ 50
0
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0
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3.1k
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Comment: C: Using the same reads to assemble mitochondria and chloroplast genomes
6.4 years ago by macielrodriguez2 ▴ 50
0
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1
reply
3.1k
views
Comment: C: How to extract only the alignments to the chloroplast reference genome of a sam
6.4 years ago by macielrodriguez2 ▴ 50
0
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0
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3.1k
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Comment: C: How to extract only the alignments to the chloroplast reference genome of a sam
6.4 years ago by macielrodriguez2 ▴ 50
4
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7
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3.1k
views
How to extract only the alignments to the chloroplast reference genome of a sam file
genome alignment next-gen Assembly
updated 6.4 years ago by 89k • written 6.4 years ago by ▴ 50
0
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1
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1.9k
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Comment: C: Abyss, Optimizing the parameter k, running time taking 7 days, still without res
6.5 years ago by macielrodriguez2 ▴ 50
0
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5
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1.9k
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Abyss, Optimizing the parameter k, running time taking 7 days, still without results
Assembly zea mays
6.5 years ago by macielrodriguez2 ▴ 50
2
votes
4
replies
2.2k
views
problem with Abyss assembler - cma-permission-denied
assembly
6.6 years ago by macielrodriguez2 ▴ 50
0
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0
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2.2k
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Comment: C: problem with Abyss assembler - cma-permission-denied
6.6 years ago by macielrodriguez2 ▴ 50
0
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0
replies
2.2k
views
Comment: C: problem with Abyss assembler - cma-permission-denied
6.6 years ago by macielrodriguez2 ▴ 50
37 results • Page 1 of 1
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