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791
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Answer: Answer: Download whole 1000 genome phase 3 for LD clumping
2.1 years ago by Vivek ★ 2.6k
1
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0
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1.5k
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Matching files by chromosome during wdl scatter gather
wdl scatter
3.1 years ago by Vivek ★ 2.6k
2
votes
0
replies
806
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Answer: A: concordance metrics for exome trio analysis
3.3 years ago by Vivek ★ 2.6k
0
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0
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1.3k
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Comment: C: Imputing specific SNPs using Beagle5.1
3.3 years ago by Vivek ★ 2.6k
1
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2
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1.3k
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Imputing specific SNPs using Beagle5.1
imputation beagle
3.3 years ago by Vivek ★ 2.6k
0
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0
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20k
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Comment: C: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
updated 3.4 years ago by 39k • written 9.1 years ago by ★ 2.6k
4
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0
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2.4k
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Answer: A: Identify overlapping coordinates
updated 3.4 years ago by 39k • written 9.1 years ago by ★ 2.6k
0
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0
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7.7k
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Comment: C: GATK-Depth of Coverage - Issue with per gene coverage
updated 3.4 years ago by 39k • written 9.1 years ago by ★ 2.6k
3
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2
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14k
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Answer: A: How to efficiently remove a list of reads from BAM file?
updated 3.4 years ago by 39k • written 7.4 years ago by ★ 2.6k
0
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1
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1.9k
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Answer: A: Multiple Exon Start and End sites in UCSC Exons table
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 2.6k
0
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1
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4.1k
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Answer: A: comparing vcf files of disease and normal samples
updated 3.5 years ago by 39k • written 9.0 years ago by ★ 2.6k
0
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0
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3.6k
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Answer: A: Annovar and CADD Annotation
updated 3.6 years ago by 39k • written 7.9 years ago by ★ 2.6k
2
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1
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3.4k
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Answer: A: How to find de novo mutation in trio sequencing data in perl or python script?
updated 3.6 years ago by 39k • written 8.7 years ago by ★ 2.6k
2
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0
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12k
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Answer: A: Perl script running slow with big files
updated 3.6 years ago by 39k • written 8.9 years ago by ★ 2.6k
3
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2
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5.6k
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Comment: C: How to interpret and extract from a Vcf file Genotype informations as values
updated 3.6 years ago by 39k • written 9.0 years ago by ★ 2.6k
55
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3
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55k
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Answer: A: VCF files: Change Chromosome Notation
updated 3.9 years ago by 39k • written 9.1 years ago by ★ 2.6k
4
votes
4
replies
2.9k
views
Y Chromosome Haplotype Inference
haplotype
updated 4.2 years ago by ▴ 130 • written 9.7 years ago by ★ 2.6k
3
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0
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19k
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Answer: A: Remove Vcf Header Lines
updated 4.3 years ago by 11k • written 10.9 years ago by ★ 2.6k
0
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1
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1.5k
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Comment: C: Position error using write.plink
4.5 years ago by Vivek ★ 2.6k
1
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0
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2.0k
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Comment: C: GWAS data analysis strategy or pipeline
4.6 years ago by Vivek ★ 2.6k
1
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1
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2.0k
views
Comment: C: GWAS data analysis strategy or pipeline
4.6 years ago by Vivek ★ 2.6k
3
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1
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2.0k
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Answer: A: GWAS data analysis strategy or pipeline
4.6 years ago by Vivek ★ 2.6k
0
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0
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1.2k
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Comment: C: Longitudinal Health Record Database Structure
4.6 years ago by Vivek ★ 2.6k
2
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5
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4.6k
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1000 Genomes and ESP Populations in Exome Aggregation Consortium Data
1000genomes ESP 1000 genomes ExAC EVS
updated 16 months ago by 39k • written 8.6 years ago by ★ 2.6k
1
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0
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1.2k
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Comment: C: vcf file processing
5.0 years ago by Vivek ★ 2.6k
0
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1
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1.2k
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Comment: C: vcf file processing
5.0 years ago by Vivek ★ 2.6k
1
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1
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2.6k
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Answer: A: How to generate text file having SNP list from bim file in plink?
5.3 years ago by Vivek ★ 2.6k
0
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0
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1.2k
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Answer: A: Individual chromosome SNP VCF
5.3 years ago by Vivek ★ 2.6k
0
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0
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4.0k
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Answer: A: Calculating ethnicity of a sample VCF
5.8 years ago by Vivek ★ 2.6k
1
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1
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3.4k
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Comment: C: retrieving from ExAC in VCF format
5.8 years ago by Vivek ★ 2.6k
2
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1
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1.6k
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Answer: A: Hardy Weinberg data from 1000 genomes project
5.8 years ago by Vivek ★ 2.6k
2
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1
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3.4k
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Comment: C: retrieving from ExAC in VCF format
5.8 years ago by Vivek ★ 2.6k
6
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2
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3.4k
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Answer: A: retrieving from ExAC in VCF format
5.8 years ago by Vivek ★ 2.6k
1
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1
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90k
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Comment: C: How to plot coverage and depth statistics of a bam file
5.9 years ago by Vivek ★ 2.6k
2
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1
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90k
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Comment: C: How to plot coverage and depth statistics of a bam file
5.9 years ago by Vivek ★ 2.6k
0
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1
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1.4k
views
Answer: A: Mapping ORFs to Chromosome locations
5.9 years ago by Vivek ★ 2.6k
1
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3
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90k
views
Comment: C: How to plot coverage and depth statistics of a bam file
5.9 years ago by Vivek ★ 2.6k
1
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1
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90k
views
Comment: C: How to plot coverage and depth statistics of a bam file
5.9 years ago by Vivek ★ 2.6k
0
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1
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90k
views
Comment: C: How to plot coverage and depth statistics of a bam file
5.9 years ago by Vivek ★ 2.6k
0
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1
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90k
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Comment: C: How to plot coverage and depth statistics of a bam file
5.9 years ago by Vivek ★ 2.6k
0
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1
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90k
views
Comment: C: How to plot coverage and depth statistics of a bam file
5.9 years ago by Vivek ★ 2.6k
0
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0
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1.9k
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Comment: C: tips for checking variants in IGV
6.0 years ago by Vivek ★ 2.6k
2
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1
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1.9k
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Answer: A: tips for checking variants in IGV
6.0 years ago by Vivek ★ 2.6k
3
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0
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1.2k
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Answer: A: question regarding bioinformatics jobs in US
6.0 years ago by Vivek ★ 2.6k
1
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0
replies
2.3k
views
Calculating minor allele concordance
concordance maf array exome impute
6.2 years ago by Vivek ★ 2.6k
0
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1
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1.2k
views
Answer: A: Protein Change Annotation from Oncotator
6.3 years ago by Vivek ★ 2.6k
1
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1
reply
2.3k
views
Answer: A: Question about GATK hardfiltering conditions
6.3 years ago by Vivek ★ 2.6k
2
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1
reply
2.8k
views
Answer: A: Principal Component Analysis
6.3 years ago by Vivek ★ 2.6k
1
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0
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1.8k
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Answer: A: plot coverage for WES data
6.3 years ago by Vivek ★ 2.6k
0
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1
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4.5k
views
Comment: C: how to analyse gene expression using RNA-seq data
6.4 years ago by Vivek ★ 2.6k
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