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What should I use to annotate the plant genes for a VCF or a Fasta?
R genome snp gene SNP
updated 4.6 years ago by 20 • written 4.8 years ago by • 0
1
vote
1
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1.3k
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Whats the Difference between variants and SNPs in IGV?(or in general)
gene genome
updated 4.8 years ago by 43k • written 4.8 years ago by • 0
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1
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840
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Comment: C: How to annotate chloroplast genome with a .gff file of the entire organism?
4.8 years ago by tmrhyd • 0
1
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3
replies
840
views
How to annotate chloroplast genome with a .gff file of the entire organism?
gene
4.8 years ago by tmrhyd • 0
0
votes
1
reply
1.0k
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Comment: C: What should I use to annotate the plant genes for a VCF or a Fasta?
4.8 years ago by tmrhyd • 0
0
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1
reply
1.0k
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Comment: C: What should I use to annotate the plant genes for a VCF or a Fasta?
4.8 years ago by tmrhyd • 0
0
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1
reply
1.2k
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Comment: C: SnpEff annotation keeps throwing Java Errors
4.8 years ago by tmrhyd • 0
5
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4
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1.2k
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SnpEff annotation keeps throwing Java Errors
Assembly genome assembly snp SNP
4.8 years ago by tmrhyd • 0
0
votes
2
replies
998
views
How to subtract out wildtype variants, and what is it?
SNP Assembly assembly genome
4.8 years ago by tmrhyd • 0
0
votes
2
replies
1.3k
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Comment: C: What is " dbSnp132.vcf " in the snpEff tutorial?
4.8 years ago by tmrhyd • 0
1
vote
4
replies
1.3k
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What is " dbSnp132.vcf " in the snpEff tutorial?
genome Assembly SNP
updated 4.8 years ago by 82k • written 4.8 years ago by • 0
0
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1
reply
1.1k
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Comment: C: Is the paired value the P value?
4.8 years ago by tmrhyd • 0
0
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1
reply
1.1k
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Comment: C: Is the paired value the P value?
updated 4.8 years ago by 141k • written 4.8 years ago by • 0
0
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5
replies
1.1k
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Is the paired value the P value?
SNP Assembly genome
4.8 years ago by tmrhyd • 0
0
votes
0
replies
1.9k
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Comment: C: Unable to find FASTA index entry for 'unitig_2993_pilon error.
4.8 years ago by tmrhyd • 0
0
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1
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1.9k
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Comment: C: Unable to find FASTA index entry for 'unitig_2993_pilon error.
4.8 years ago by tmrhyd • 0
1
vote
4
replies
1.9k
views
Unable to find FASTA index entry for 'unitig_2993_pilon error.
SNP genome software error alignment
4.8 years ago by tmrhyd • 0
0
votes
1
reply
702
views
How do you make a Bash script put output files in a specific directory
genome
4.8 years ago by tmrhyd • 0
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