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6
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4
replies
3.2k
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What is the best practice for the analysis of single-cell RNA-seq of mouse and human mixed cells?
single-cell RNA-seq
3.0 years ago by Dan ▴ 180
2
votes
0
replies
3.2k
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Answer: Answer: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
3.0 years ago by Dan ▴ 180
0
votes
0
replies
1.8k
views
Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
3.0 years ago by Dan ▴ 180
0
votes
1
reply
1.8k
views
Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
3.0 years ago by Dan ▴ 180
0
votes
2
replies
1.8k
views
Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
3.0 years ago by Dan ▴ 180
0
votes
0
replies
1.8k
views
Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
3.0 years ago by Dan ▴ 180
0
votes
1
reply
1.8k
views
Comment: Comment: Can I directly compare the peaks from pair-end 50 and pair-end 100 ATAC-seq?
3.0 years ago by Dan ▴ 180
3
votes
10
replies
1.8k
views
Can I directly compare the regions defined by peaks from pair-end 50 and pair-end 100 ATAC-seq?
ATAC-seq
updated 3.0 years ago by 89k • written 3.0 years ago by ▴ 180
0
votes
0
replies
3.2k
views
Comment: Comment: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
3.0 years ago by Dan ▴ 180
6
votes
5
replies
3.0k
views
How to normalize the intensity of bigwig files based on a group of house-keeping genes in ATAC-seq data?
ATAC bigwig
updated 3.1 years ago by 89k • written 3.1 years ago by ▴ 180
0
votes
1
reply
3.0k
views
Comment: Comment: How to normalize the intensity of bigwig files based on a group of house-keeping
3.1 years ago by Dan ▴ 180
0
votes
1
reply
1.5k
views
Comment: Comment: How to filter out the promoter-TSS peaks from the `.narrowPeak` file?
3.1 years ago by Dan ▴ 180
5
votes
3
replies
1.5k
views
How to filter out the promoter-TSS peaks from the `.narrowPeak` file?
awk
updated 3.1 years ago by 5.1k • written 3.1 years ago by ▴ 180
3
votes
1
reply
835
views
How to change the chromosome names of the head line of fasta file?
sed
updated 3.2 years ago by 89k • written 3.2 years ago by ▴ 180
0
votes
0
replies
8.8k
views
Comment: Comment: Convert Granges list of peaks into consensus counts
3.2 years ago by Dan ▴ 180
0
votes
0
replies
2.6k
views
Comment: Comment: nextflow error
3.2 years ago by Dan ▴ 180
0
votes
0
replies
8.4k
views
Comment: Comment: Error: package or namespace load failed for ‘clusterProfiler’: object ‘get_fun_
3.2 years ago by Dan ▴ 180
14
votes
5
replies
2.6k
views
nextflow error
nextflow
3.2 years ago by Dan ▴ 180
0
votes
0
replies
4.8k
views
Comment: Comment: How to make a TSS enrichment plot in ATAC-seq analysis?
3.2 years ago by Dan ▴ 180
3
votes
3
replies
4.8k
views
How to make a TSS enrichment plot in ATAC-seq analysis?
ATAC
updated 17 months ago by • 0 • written 3.2 years ago by ▴ 180
4
votes
1
reply
820
views
How to define the open chromatin region in ATACseq? And how to filter the .bam file based on insert size?
ATAC
updated 3.2 years ago by 89k • written 3.2 years ago by ▴ 180
2
votes
2
replies
1.1k
views
It is weird there are no reads less than 100 bp in qualimap.
qualimap
3.2 years ago by Dan ▴ 180
2
votes
0
replies
1.1k
views
Answer: Answer: It is weird there are no reads less than 100 bp in qualimap.
3.2 years ago by Dan ▴ 180
0
votes
1
reply
1.5k
views
Comment: Comment: why bowtie2 doesn’t report longer than 500bp inserts?
3.2 years ago by Dan ▴ 180
4
votes
3
replies
1.5k
views
why bowtie2 doesn’t report longer than 500bp inserts?
bowtie2 BAM
updated 3.2 years ago by ▴ 360 • written 3.2 years ago by ▴ 180
3
votes
2
replies
750
views
Is it possible to subsample the especially large files during alignment using Bowtie2 or bwa?
bwa Bowtie2
updated 3.3 years ago by 153k • written 3.3 years ago by ▴ 180
0
votes
0
replies
473
views
How to choose the library normalization size in single cell RNA-seq data Preprocessing?
cell single RNA-seq
3.5 years ago by Dan ▴ 180
0
votes
0
replies
1.7k
views
Comment: Comment: Can I change the mouse symbol gene name to upper case to run GSEA using gmt file
3.5 years ago by Dan ▴ 180
0
votes
2
replies
1.7k
views
Can I change the mouse symbol gene name to upper case to run GSEA using gmt files that contain upper case gene names?
GSEA gmt
3.5 years ago by Dan ▴ 180
0
votes
0
replies
8.8k
views
Comment: Comment: Convert Granges list of peaks into consensus counts
3.6 years ago by Dan ▴ 180
0
votes
0
replies
129k
views
Comment: Comment: How To Split A Bam File By Chromosome
3.6 years ago by Dan ▴ 180
0
votes
1
reply
129k
views
Comment: Comment: How To Split A Bam File By Chromosome
3.6 years ago by Dan ▴ 180
6
votes
2
replies
1.3k
views
Can the input file name be the same as the output file in `samtools sort`?
Samtools
updated 2.3 years ago by 45k • written 3.6 years ago by ▴ 180
0
votes
0
replies
919
views
How to analyze whole-genome data using Picard and GATK?
whole-genome GATK Picard
3.8 years ago by Dan ▴ 180
3
votes
2
replies
1.7k
views
Which is @RG read group in the head of bam files?
sam bam
3.8 years ago by Dan ▴ 180
0
votes
0
replies
1.7k
views
Comment: Comment: Which is @RG read group in the head of bam files?
3.8 years ago by Dan ▴ 180
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