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8
votes
9
replies
1.5k
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Extract Reads From A Bam file according to gene components `5'UTR, 1st exon, 1st intron, ..., 3'UTR, intergenic, ...`
BAM
15 days ago by Dan ▴ 120
2
votes
0
replies
1.5k
views
Answer: Answer: Extract Reads From A Bam file according to gene components `5'UTR, 1st exon, 1st
15 days ago by Dan ▴ 120
0
votes
0
replies
231
views
Comment: Comment: `MOFAobject@expectations` is empty list
18 days ago by Dan ▴ 120
1
vote
2
replies
231
views
`MOFAobject@expectations` is empty list
MOFA2
updated 18 days ago by 39k • written 18 days ago by ▴ 120
0
votes
0
replies
327
views
Comment: Comment: What is difference between ` union.bed ` files and other `bed` files of `RSeQC`?
18 days ago by Dan ▴ 120
0
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0
replies
327
views
Comment: Comment: What is difference between ` union.bed ` files and other `bed` files of `RSeQC`?
23 days ago by Dan ▴ 120
2
votes
3
replies
327
views
Why is there a big difference between the outputs of `geneBody_coverage` of `RSeQC` when using different bed files?
RSeQC
18 days ago by Dan ▴ 120
0
votes
0
replies
150
views
How to save the digital percentage of `ChIPseeker::plotAnnoPie()` to a table?
ChIPseeker
4 weeks ago by Dan ▴ 120
0
votes
0
replies
1.5k
views
Comment: Comment: Extract Reads From A Bam file according to gene components `5'UTR, 1st exon, 1st
5 weeks ago by Dan ▴ 120
0
votes
1
reply
1.5k
views
Comment: Comment: Extract Reads From A Bam file according to gene components `5'UTR, 1st exon, 1st
5 weeks ago by Dan ▴ 120
0
votes
1
reply
1.5k
views
Comment: Comment: Extract Reads From A Bam file according to gene components `5'UTR, 1st exon, 1st
5 weeks ago by Dan ▴ 120
1
vote
0
replies
1.5k
views
Comment: Comment: Extract Reads From A Bam file according to gene components `5'UTR, 1st exon, 1st
5 weeks ago by Dan ▴ 120
0
votes
0
replies
133k
views
Comment: Comment: Extract Reads From A Bam File That Fall Within A Given Region
5 weeks ago by Dan ▴ 120
3
votes
0
replies
208
views
How to calculate the false discovery proportion from the p-value histogram?
false-discovery-rate
6 weeks ago by Dan ▴ 120
1
vote
0
replies
273
views
What is the difference between `possorted_genome_bam.bam` in the output of `cellranger count` and `sample_alignments.bam` in the output of `cellrange…
single-cell analysis RNA-seq velocity
7 weeks ago by Dan ▴ 120
5
votes
1
reply
337
views
How to derive conditional maximum likelihood of the sum of independent negative binomial variables?
limma voom biostatistics
9 weeks ago by Dan ▴ 120
4
votes
0
replies
337
views
Answer: Answer: How to derive conditional maximum likelihood of the sum of independent negative
9 weeks ago by Dan ▴ 120
0
votes
0
replies
256
views
Comment: Comment: How to quantify the reads of each peak for ChIP-seq data?
3 months ago by Dan ▴ 120
3
votes
2
replies
256
views
How to quantify the reads of each peak for ChIP-seq data?
ChIP-seq DiffBind
3 months ago by Dan ▴ 120
3
votes
2
replies
323
views
How to find all of the new RNA splices from bulk RNA-seq data?
RNA-seq RNA-splices
updated 12 weeks ago by ▴ 450 • written 3 months ago by ▴ 120
4
votes
2
replies
392
views
How to quantify the reads of peaks?
ChIP-seq ATAC-seq
updated 3 months ago by ▴ 20 • written 3 months ago by ▴ 120
0
votes
0
replies
325
views
Comment: Comment: Is there a package that can do downstream analysis of single-cell V(D)J sequenci
3 months ago by Dan ▴ 120
4
votes
3
replies
325
views
Is there a package that can do downstream analysis of single-cell V(D)J sequencing?
single-cell-VDJ
3 months ago by Dan ▴ 120
0
votes
1
reply
305
views
Comment: Comment: How to do Binding and Expression Target Analysis?
3 months ago by Dan ▴ 120
1
vote
3
replies
305
views
How to do Binding and Expression Target Analysis?
ChIP-seq
updated 3 months ago by 39k • written 3 months ago by ▴ 120
6
votes
4
replies
596
views
How to install `BETA` on linux server?
ChIP-seq BETA
updated 3 months ago by 72k • written 3 months ago by ▴ 120
8
votes
7
replies
623
views
6 follow
How should I deduce the variance and expectation of the logarithm of a variable in the `voom` paper?
Biostatistics voom limma
3 months ago by Dan ▴ 120
0
votes
2
replies
623
views
Comment: Comment: How should I deduce the variable from its variance and expectation in the `voom`
3 months ago by Dan ▴ 120
2
votes
1
reply
282
views
How can I plot the heatmap with the fold changes of ChIP-seq occupancy levels of 2 samples using `deepTools`?
deepTools
updated 3 months ago by ★ 1.1k • written 3 months ago by ▴ 120
0
votes
0
replies
424
views
Comment: Comment: Is there a method to group and summarize the `homer` `findMotifsGenome.pl` outpu
3 months ago by Dan ▴ 120
2
votes
3
replies
424
views
Is there a method to group and summarize the `homer` `findMotifsGenome.pl` output?
Motif-analysis
3 months ago by Dan ▴ 120
0
votes
0
replies
259
views
How to customize the Profile values of `plotHeatmap` of `deeptools`?
deeptools
4 months ago by Dan ▴ 120
0
votes
1
reply
983
views
Comment: Comment: umap failed to cluster the cells
5 months ago by Dan ▴ 120
3
votes
3
replies
983
views
umap failed to cluster the cells
single-cell umap
updated 5 months ago by ★ 23k • written 5 months ago by ▴ 120
2
votes
1
reply
562
views
How can I customize `plotheatmap` of `deepTools` to different colors for different `.bed` file regions and how to customize the color of the intensit…
deepTools plotheatmap
updated 6 months ago by ▴ 100 • written 7 months ago by ▴ 120
0
votes
0
replies
434
views
Comment: Comment: Place to Acquire Bulk RNA-seq Cancer Datasets with Survival and Followup informa
8 months ago by Dan ▴ 120
4
votes
4
replies
887
views
What is the best practice for the analysis of single-cell RNA-seq of mouse and human mixed cells?
single-cell RNA-seq
8 months ago by Dan ▴ 120
0
votes
0
replies
887
views
Answer: Answer: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
8 months ago by Dan ▴ 120
0
votes
0
replies
684
views
Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
8 months ago by Dan ▴ 120
0
votes
1
reply
684
views
Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
8 months ago by Dan ▴ 120
0
votes
2
replies
684
views
Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
8 months ago by Dan ▴ 120
0
votes
0
replies
684
views
Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
8 months ago by Dan ▴ 120
0
votes
1
reply
684
views
Comment: Comment: Can I directly compare the peaks from pair-end 50 and pair-end 100 ATAC-seq?
8 months ago by Dan ▴ 120
2
votes
10
replies
684
views
Can I directly compare the regions defined by peaks from pair-end 50 and pair-end 100 ATAC-seq?
ATAC-seq
updated 8 months ago by 72k • written 8 months ago by ▴ 120
0
votes
0
replies
887
views
Comment: Comment: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
8 months ago by Dan ▴ 120
5
votes
5
replies
841
views
How to normalize the intensity of bigwig files based on a group of house-keeping genes in ATAC-seq data?
ATAC bigwig
updated 8 months ago by 72k • written 8 months ago by ▴ 120
0
votes
1
reply
841
views
Comment: Comment: How to normalize the intensity of bigwig files based on a group of house-keeping
8 months ago by Dan ▴ 120
0
votes
1
reply
538
views
Comment: Comment: How to filter out the promoter-TSS peaks from the `.narrowPeak` file?
9 months ago by Dan ▴ 120
5
votes
3
replies
538
views
How to filter out the promoter-TSS peaks from the `.narrowPeak` file?
awk
updated 9 months ago by 2.6k • written 9 months ago by ▴ 120
3
votes
1
reply
329
views
How to change the chromosome names of the head line of fasta file?
sed
updated 10 months ago by 72k • written 10 months ago by ▴ 120
73 results • Page 1 of 2
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