Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
0
votes
8
replies
5.6k
views
8 follow
cellranger mkref failed
next-gen-sequencing
software-error
RNA-seq
updated 3 months ago by
EricYang
• 0 • written 4.9 years ago by
Dan
▴ 180
6
votes
2
replies
493
views
How I should set `STAR` parameters to keep all the intronic reads?
STAR
mapping
updated 4 months ago by
dsull
★ 6.4k • written 4 months ago by
Dan
▴ 180
6
votes
8
replies
1.3k
views
The RNA velocity are opposite in 'dynamical' and 'stochastic' modes.
RNA-velocity
updated 9 months ago by
james.hawley
▴ 40 • written 9 months ago by
Dan
▴ 180
0
votes
1
reply
1.3k
views
Comment:
Comment: The RNA velocity are opposite in 'dynamical' and 'stochastic' modes.
9 months ago by
Dan
▴ 180
1
vote
1
reply
1.3k
views
Comment:
Comment: The RNA velocity are opposite in 'dynamical' and 'stochastic' modes.
9 months ago by
Dan
▴ 180
1
vote
1
reply
1.3k
views
Comment:
Comment: The RNA velocity are opposite in 'dynamical' and 'stochastic' modes.
9 months ago by
Dan
▴ 180
8
votes
5
replies
1.1k
views
Is there a benchmark analysis for the best tool for multiome single-cell RNA+ATAC data analysis?
multiome
single-cell
updated 10 months ago by
ATpoint
84k • written 10 months ago by
Dan
▴ 180
0
votes
1
reply
1.1k
views
Comment:
Comment: Is there a benchmark analysis for the best tool for multiome single-cell RNA+ATA
10 months ago by
Dan
▴ 180
3
votes
1
reply
587
views
Are there pipelines to analyze the Quality Controls for ATAC-seq and ChIP-seq data?
ChIP-seq
ATAC-seq
updated 12 months ago by
Papyrus
★ 2.9k • written 12 months ago by
Dan
▴ 180
0
votes
0
replies
2.9k
views
Comment:
Comment: umap failed to cluster the cells
12 months ago by
Dan
▴ 180
6
votes
5
replies
2.9k
views
umap failed to cluster the cells
single-cell
umap
12 months ago by
Dan
▴ 180
1
vote
0
replies
369
views
How to predict gene amplification from RNAseq and ATACseq data?
amplification
ATAC
13 months ago by
Dan
▴ 180
0
votes
0
replies
744
views
Comment:
Comment: How to make the profile line of `deepTools::plotHeatmap` more smooth?
13 months ago by
Dan
▴ 180
2
votes
2
replies
744
views
How to make the profile line of `deepTools::plotHeatmap` more smooth?
plotHeatmap
deepTools
13 months ago by
Dan
▴ 180
8
votes
9
replies
2.7k
views
Extract Reads From A Bam file according to gene components `5'UTR, 1st exon, 1st intron, ..., 3'UTR, intergenic, ...`
BAM
14 months ago by
Dan
▴ 180
2
votes
0
replies
2.7k
views
Answer:
Answer: Extract Reads From A Bam file according to gene components `5'UTR, 1st exon, 1st
14 months ago by
Dan
▴ 180
0
votes
0
replies
553
views
Comment:
Comment: `MOFAobject@expectations` is empty list
14 months ago by
Dan
▴ 180
1
vote
2
replies
553
views
`MOFAobject@expectations` is empty list
MOFA2
updated 14 months ago by
Ram
44k • written 14 months ago by
Dan
▴ 180
0
votes
0
replies
825
views
Comment:
Comment: What is difference between ` union.bed ` files and other `bed` files of `RSeQC`?
14 months ago by
Dan
▴ 180
0
votes
0
replies
825
views
Comment:
Comment: What is difference between ` union.bed ` files and other `bed` files of `RSeQC`?
14 months ago by
Dan
▴ 180
4
votes
3
replies
825
views
Why is there a big difference between the outputs of `geneBody_coverage` of `RSeQC` when using different bed files?
RSeQC
14 months ago by
Dan
▴ 180
0
votes
0
replies
495
views
How to save the digital percentage of `ChIPseeker::plotAnnoPie()` to a table?
ChIPseeker
15 months ago by
Dan
▴ 180
0
votes
0
replies
2.7k
views
Comment:
Comment: Extract Reads From A Bam file according to gene components `5'UTR, 1st exon, 1st
15 months ago by
Dan
▴ 180
0
votes
1
reply
2.7k
views
Comment:
Comment: Extract Reads From A Bam file according to gene components `5'UTR, 1st exon, 1st
15 months ago by
Dan
▴ 180
0
votes
1
reply
2.7k
views
Comment:
Comment: Extract Reads From A Bam file according to gene components `5'UTR, 1st exon, 1st
15 months ago by
Dan
▴ 180
1
vote
0
replies
2.7k
views
Comment:
Comment: Extract Reads From A Bam file according to gene components `5'UTR, 1st exon, 1st
15 months ago by
Dan
▴ 180
0
votes
0
replies
164k
views
Comment:
Comment: Extract Reads From A Bam File That Fall Within A Given Region
15 months ago by
Dan
▴ 180
3
votes
0
replies
381
views
How to calculate the false discovery proportion from the p-value histogram?
false-discovery-rate
15 months ago by
Dan
▴ 180
1
vote
0
replies
687
views
What is the difference between `possorted_genome_bam.bam` in the output of `cellranger count` and `sample_alignments.bam` in the output of `cellrange…
single-cell
analysis
RNA-seq
velocity
15 months ago by
Dan
▴ 180
5
votes
1
reply
611
views
How to derive conditional maximum likelihood of the sum of independent negative binomial variables?
limma
voom
biostatistics
16 months ago by
Dan
▴ 180
4
votes
0
replies
611
views
Answer:
Answer: How to derive conditional maximum likelihood of the sum of independent negative
16 months ago by
Dan
▴ 180
0
votes
0
replies
569
views
Comment:
Comment: How to quantify the reads of each peak for ChIP-seq data?
17 months ago by
Dan
▴ 180
3
votes
2
replies
569
views
How to quantify the reads of each peak for ChIP-seq data?
ChIP-seq
DiffBind
17 months ago by
Dan
▴ 180
3
votes
2
replies
615
views
How to find all of the new RNA splices from bulk RNA-seq data?
RNA-seq
RNA-splices
updated 17 months ago by
dthorbur
★ 2.2k • written 17 months ago by
Dan
▴ 180
4
votes
2
replies
743
views
How to quantify the reads of peaks?
ChIP-seq
ATAC-seq
updated 17 months ago by
heritabilities
▴ 20 • written 17 months ago by
Dan
▴ 180
0
votes
0
replies
865
views
Comment:
Comment: Is there a package that can do downstream analysis of single-cell V(D)J sequenci
17 months ago by
Dan
▴ 180
4
votes
3
replies
865
views
Is there a package that can do downstream analysis of single-cell V(D)J sequencing?
single-cell-VDJ
17 months ago by
Dan
▴ 180
0
votes
1
reply
725
views
Comment:
Comment: How to do Binding and Expression Target Analysis?
17 months ago by
Dan
▴ 180
1
vote
3
replies
725
views
How to do Binding and Expression Target Analysis?
ChIP-seq
updated 17 months ago by
Ram
44k • written 17 months ago by
Dan
▴ 180
6
votes
4
replies
1.1k
views
How to install `BETA` on linux server?
ChIP-seq
BETA
updated 17 months ago by
ATpoint
84k • written 17 months ago by
Dan
▴ 180
8
votes
7
replies
1.2k
views
6 follow
How should I deduce the variance and expectation of the logarithm of a variable in the `voom` paper?
Biostatistics
voom
limma
17 months ago by
Dan
▴ 180
0
votes
2
replies
1.2k
views
Comment:
Comment: How should I deduce the variable from its variance and expectation in the `voom`
17 months ago by
Dan
▴ 180
2
votes
1
reply
551
views
How can I plot the heatmap with the fold changes of ChIP-seq occupancy levels of 2 samples using `deepTools`?
deepTools
updated 17 months ago by
Trivas
★ 1.8k • written 17 months ago by
Dan
▴ 180
0
votes
0
replies
810
views
Comment:
Comment: Is there a method to group and summarize the `homer` `findMotifsGenome.pl` outpu
18 months ago by
Dan
▴ 180
2
votes
3
replies
810
views
Is there a method to group and summarize the `homer` `findMotifsGenome.pl` output?
Motif-analysis
18 months ago by
Dan
▴ 180
0
votes
0
replies
439
views
How to customize the Profile values of `plotHeatmap` of `deeptools`?
deeptools
18 months ago by
Dan
▴ 180
0
votes
1
reply
2.9k
views
Comment:
Comment: umap failed to cluster the cells
19 months ago by
Dan
▴ 180
2
votes
1
reply
982
views
How can I customize `plotheatmap` of `deepTools` to different colors for different `.bed` file regions and how to customize the color of the intensit…
deepTools
plotheatmap
updated 21 months ago by
M.O.L.S
▴ 100 • written 22 months ago by
Dan
▴ 180
0
votes
0
replies
769
views
Comment:
Comment: Place to Acquire Bulk RNA-seq Cancer Datasets with Survival and Followup informa
22 months ago by
Dan
▴ 180
6
votes
4
replies
1.9k
views
What is the best practice for the analysis of single-cell RNA-seq of mouse and human mixed cells?
single-cell
RNA-seq
22 months ago by
Dan
▴ 180
85 results • Page
1 of 2
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6