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Answer: Answer: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
20 months ago by Dan ▴ 180
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Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
20 months ago by Dan ▴ 180
0
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1
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1.1k
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Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
20 months ago by Dan ▴ 180
0
votes
2
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1.1k
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Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
20 months ago by Dan ▴ 180
0
votes
0
replies
1.1k
views
Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
20 months ago by Dan ▴ 180
0
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1
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1.1k
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Comment: Comment: Can I directly compare the peaks from pair-end 50 and pair-end 100 ATAC-seq?
20 months ago by Dan ▴ 180
3
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10
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1.1k
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Can I directly compare the regions defined by peaks from pair-end 50 and pair-end 100 ATAC-seq?
ATAC-seq
updated 20 months ago by 82k • written 20 months ago by ▴ 180
0
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0
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1.7k
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Comment: Comment: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
20 months ago by Dan ▴ 180
5
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5
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1.5k
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How to normalize the intensity of bigwig files based on a group of house-keeping genes in ATAC-seq data?
ATAC bigwig
updated 20 months ago by 82k • written 20 months ago by ▴ 180
0
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1
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1.5k
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Comment: Comment: How to normalize the intensity of bigwig files based on a group of house-keeping
20 months ago by Dan ▴ 180
0
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1
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886
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Comment: Comment: How to filter out the promoter-TSS peaks from the `.narrowPeak` file?
21 months ago by Dan ▴ 180
5
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3
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886
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How to filter out the promoter-TSS peaks from the `.narrowPeak` file?
awk
updated 21 months ago by 3.9k • written 21 months ago by ▴ 180
3
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1
reply
511
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How to change the chromosome names of the head line of fasta file?
sed
updated 21 months ago by 82k • written 21 months ago by ▴ 180
0
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0
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6.5k
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Comment: Comment: Convert Granges list of peaks into consensus counts
22 months ago by Dan ▴ 180
0
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0
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1.8k
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Comment: Comment: nextflow error
22 months ago by Dan ▴ 180
0
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7.0k
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Comment: Comment: Error: package or namespace load failed for ‘clusterProfiler’: object ‘get_fun_
22 months ago by Dan ▴ 180
14
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5
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1.8k
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nextflow error
nextflow
22 months ago by Dan ▴ 180
0
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0
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2.4k
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Comment: Comment: How to make a TSS enrichment plot in ATAC-seq analysis?
22 months ago by Dan ▴ 180
3
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3
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2.4k
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How to make a TSS enrichment plot in ATAC-seq analysis?
ATAC
updated 7 days ago by • 0 • written 22 months ago by ▴ 180
4
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1
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554
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How to define the open chromatin region in ATACseq? And how to filter the .bam file based on insert size?
ATAC
updated 22 months ago by 82k • written 22 months ago by ▴ 180
2
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2
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670
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It is weird there are no reads less than 100 bp in qualimap.
qualimap
22 months ago by Dan ▴ 180
2
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0
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670
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Answer: Answer: It is weird there are no reads less than 100 bp in qualimap.
22 months ago by Dan ▴ 180
0
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1
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833
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Comment: Comment: why bowtie2 doesn’t report longer than 500bp inserts?
22 months ago by Dan ▴ 180
4
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3
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833
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why bowtie2 doesn’t report longer than 500bp inserts?
bowtie2 BAM
updated 22 months ago by ▴ 340 • written 22 months ago by ▴ 180
3
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2
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497
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Is it possible to subsample the especially large files during alignment using Bowtie2 or bwa?
bwa Bowtie2
updated 22 months ago by 142k • written 22 months ago by ▴ 180
0
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0
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321
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How to choose the library normalization size in single cell RNA-seq data Preprocessing?
cell single RNA-seq
2.2 years ago by Dan ▴ 180
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0
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1.2k
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Comment: Comment: Can I change the mouse symbol gene name to upper case to run GSEA using gmt file
2.2 years ago by Dan ▴ 180
0
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2
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1.2k
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Can I change the mouse symbol gene name to upper case to run GSEA using gmt files that contain upper case gene names?
GSEA gmt
2.2 years ago by Dan ▴ 180
0
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0
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6.5k
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Comment: Comment: Convert Granges list of peaks into consensus counts
2.2 years ago by Dan ▴ 180
0
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0
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113k
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Comment: Comment: How To Split A Bam File By Chromosome
2.2 years ago by Dan ▴ 180
0
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1
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113k
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Comment: Comment: How To Split A Bam File By Chromosome
2.2 years ago by Dan ▴ 180
6
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2
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844
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Can the input file name be the same as the output file in `samtools sort`?
Samtools
updated 10 months ago by 43k • written 2.2 years ago by ▴ 180
0
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0
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634
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How to analyze whole-genome data using Picard and GATK?
whole-genome GATK Picard
2.4 years ago by Dan ▴ 180
3
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2
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1.2k
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Which is @RG read group in the head of bam files?
sam bam
2.4 years ago by Dan ▴ 180
0
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0
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1.2k
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Comment: Comment: Which is @RG read group in the head of bam files?
2.4 years ago by Dan ▴ 180
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