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Comment: C: TMM normalisation from RSEM raw counts
updated 5.3 years ago by 45k • written 10.9 years ago by ▴ 350
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9.1k
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Comment: C: TMM normalisation from RSEM raw counts
updated 5.3 years ago by 45k • written 10.9 years ago by ▴ 350
0
votes
1
reply
9.1k
views
Comment: C: TMM normalisation from RSEM raw counts
updated 5.3 years ago by 45k • written 10.9 years ago by ▴ 350
0
votes
1
reply
9.1k
views
Comment: C: TMM normalisation from RSEM raw counts
updated 5.3 years ago by 45k • written 10.9 years ago by ▴ 350
0
votes
1
reply
9.1k
views
Comment: C: TMM normalisation from RSEM raw counts
updated 5.3 years ago by 45k • written 10.9 years ago by ▴ 350
0
votes
1
reply
9.1k
views
Comment: C: TMM normalisation from RSEM raw counts
updated 5.3 years ago by 45k • written 10.9 years ago by ▴ 350
0
votes
1
reply
9.1k
views
Comment: C: TMM normalisation from RSEM raw counts
updated 5.3 years ago by 45k • written 10.9 years ago by ▴ 350
0
votes
1
reply
9.1k
views
Comment: A: TMM normalisation from RSEM raw counts
updated 5.4 years ago by 45k • written 10.9 years ago by ▴ 350
0
votes
0
replies
29k
views
Comment: C: RNA-seq normalization: How to use TMM and rpkm() in EdgeR
updated 5.4 years ago by 45k • written 11.1 years ago by ▴ 350
0
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1
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29k
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Comment: C: RNA-seq normalization: How to use TMM and rpkm() in EdgeR
updated 5.4 years ago by 45k • written 11.1 years ago by ▴ 350
0
votes
1
reply
4.0k
views
Answer: A: Extract consensus gene sequence (from gff file) from bam file
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 350
0
votes
1
reply
3.9k
views
Comment: C: samtools Mpileup quality scores?
updated 5.5 years ago by 45k • written 9.6 years ago by ▴ 350
1
vote
1
reply
14k
views
Comment: C: Improving efficiency of awk for large files
updated 5.5 years ago by 45k • written 9.8 years ago by ▴ 350
0
votes
1
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14k
views
Comment: C: Improving efficiency of awk for large files
updated 5.5 years ago by 45k • written 9.8 years ago by ▴ 350
0
votes
0
replies
14k
views
Comment: C: Improving efficiency of awk for large files
updated 5.5 years ago by 45k • written 9.8 years ago by ▴ 350
0
votes
2
replies
14k
views
Comment: C: Improving efficiency of awk for large files
updated 5.5 years ago by 45k • written 9.8 years ago by ▴ 350
1
vote
1
reply
14k
views
Comment: C: Improving efficiency of awk for large files
updated 5.5 years ago by 45k • written 9.8 years ago by ▴ 350
0
votes
3
replies
3.2k
views
VCF format query
vcf
updated 2.8 years ago by 45k • written 9.3 years ago by ▴ 350
1
vote
7
replies
5.4k
views
Mpileup Segmentation Fault
mpileup
updated 6.3 years ago by 20 • written 12.7 years ago by ▴ 350
2
votes
7
replies
7.1k
views
Bowtie2 Reads that aligned concordantly exactly 1 time
Bowtie2 SAMtools
updated 2.3 years ago by 45k • written 10.0 years ago by ▴ 350
0
votes
0
replies
307k
views
Comment: C: How To Filter Mapped Reads With Samtools
updated 6.8 years ago by 45k • written 9.5 years ago by ▴ 350
1
vote
0
replies
2.4k
views
Answer: A: RSEM ignores quality scores?
7.7 years ago by AW ▴ 350
1
vote
1
reply
2.4k
views
RSEM ignores quality scores?
RSEM phred
7.8 years ago by AW ▴ 350
2
votes
2
replies
5.3k
views
Cufflinks - Assigning Transcripts Or Exons
cufflinks rna-seq fpkm
updated 7.8 years ago by 20 • written 12.7 years ago by ▴ 350
1
vote
1
reply
3.1k
views
varscan2 mpileup2snp output contains indels
vcf indels mpileup2snp varscan
updated 8.3 years ago by 20 • written 9.2 years ago by ▴ 350
0
votes
0
replies
1.5k
views
Varscan mpileup2snp coverage filter
varscan mpileup2snp
8.5 years ago by AW ▴ 350
0
votes
0
replies
3.1k
views
Varscan mpileup2snp parameters
varscan mpileup2snp snpcalling
8.5 years ago by AW ▴ 350
0
votes
1
reply
3.5k
views
VCFtools filter - genotype quality score changes
vcftools genotype quality GQ
updated 8.7 years ago by ★ 3.8k • written 8.7 years ago by ▴ 350
3
votes
3
replies
4.6k
views
How to do consensus calling from bam files
Consensus calling SNPs Samtools BCFtools
updated 8.7 years ago by ★ 3.8k • written 8.7 years ago by ▴ 350
5
votes
4
replies
5.2k
views
HISAT - Stringtie
RNA-Seq
9.0 years ago by AW ▴ 350
1
vote
1
reply
5.2k
views
Answer: A: HISAT - Stringtie
9.0 years ago by AW ▴ 350
1
vote
0
replies
5.2k
views
Comment: C: HISAT - Stringtie
9.0 years ago by AW ▴ 350
0
votes
0
replies
2.8k
views
vcf format genotypes called
vcf mpileup2snp
9.2 years ago by AW ▴ 350
0
votes
4
replies
3.1k
views
SAM file output
sam bowtie2 DNA-seq
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 350
0
votes
1
reply
3.2k
views
Comment: Comment: VCF format query
updated 2.8 years ago by 45k • written 9.3 years ago by ▴ 350
0
votes
2
replies
2.4k
views
Samtools mpileup vcf file
bam vcf SNPs mpileup samtools
written 9.5 years ago by ▴ 350
0
votes
6
replies
4.0k
views
Extract consensus gene sequence (from gff file) from bam file
bam DNA-seq gff
updated 2.8 years ago by 45k • written 9.5 years ago by ▴ 350
0
votes
0
replies
4.0k
views
Comment: C: Extract consensus gene sequence (from gff file) from bam file
9.5 years ago by AW ▴ 350
0
votes
1
reply
3.9k
views
Comment: C: samtools Mpileup quality scores?
9.6 years ago by AW ▴ 350
0
votes
0
replies
3.9k
views
Comment: A: samtools Mpileup quality scores?
9.6 years ago by AW ▴ 350
0
votes
6
replies
3.9k
views
samtools Mpileup quality scores?
mpileup quality-scores samtools
updated 2.7 years ago by 45k • written 9.6 years ago by ▴ 350
15
votes
34
replies
14k
views
Improving efficiency of awk for large files
awk
updated 2.6 years ago by 45k • written 9.8 years ago by ▴ 350
0
votes
1
reply
14k
views
Comment: C: Improving efficiency of awk for large files
9.8 years ago by AW ▴ 350
1
vote
1
reply
14k
views
Comment: C: Improving efficiency of awk for large files
9.8 years ago by AW ▴ 350
0
votes
0
replies
14k
views
Comment: C: Improving efficiency of awk for large files
9.8 years ago by AW ▴ 350
0
votes
1
reply
14k
views
Comment: C: Improving efficiency of awk for large files
9.8 years ago by AW ▴ 350
0
votes
1
reply
14k
views
Comment: C: Improving efficiency of awk for large files
9.8 years ago by AW ▴ 350
0
votes
1
reply
14k
views
Comment: C: Improving efficiency of awk for large files
9.8 years ago by AW ▴ 350
0
votes
1
reply
14k
views
Comment: C: Improving efficiency of awk for large files
9.8 years ago by AW ▴ 350
0
votes
0
replies
14k
views
Comment: C: Improving efficiency of awk for large files
9.8 years ago by AW ▴ 350
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