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2
votes
3
replies
5.6k
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Functional enrichment analysis of bacteria
GO enrichment DAVID bacteria clusterProfiler R
updated 4.1 years ago by ★ 2.6k • written 4.8 years ago by ▴ 110
0
votes
1
reply
1.1k
views
Comment: C: Size factors upon collapsing replicates in RNA-seq analysis
4.6 years ago by mickey_95 ▴ 110
1
vote
3
replies
1.1k
views
Size factors upon collapsing replicates in RNA-seq analysis
RNA-Seq DESeq2 R
4.6 years ago by mickey_95 ▴ 110
0
votes
0
replies
5.6k
views
Comment: C: Functional enrichment analysis of bacteria
4.7 years ago by mickey_95 ▴ 110
1
vote
1
reply
2.0k
views
Comment: C: RNA-seq expression patterns
4.8 years ago by mickey_95 ▴ 110
0
votes
1
reply
2.0k
views
Comment: C: RNA-seq expression patterns
4.8 years ago by mickey_95 ▴ 110
4
votes
5
replies
2.0k
views
RNA-seq expression patterns
rna-seq pattern analysis differential expression
4.8 years ago by mickey_95 ▴ 110
17
votes
2
replies
16k
views
Finding overlaps between GRanges objects
GRanges promoter peak IRanges ChIP-Seq
updated 4.9 years ago by ▴ 960 • written 4.9 years ago by ▴ 110
8
votes
5
replies
5.6k
views
TSS metaprofile using Deeptools
Deeptools computeMatrix GTF metaprofile
updated 5.1 years ago by ▴ 40 • written 5.1 years ago by ▴ 110
0
votes
2
replies
5.6k
views
Comment: C: TSS metaprofile using Deeptools
5.1 years ago by mickey_95 ▴ 110
0
votes
0
replies
2.1k
views
Creating TxDB objects from different sources
TxDb genome annotation Biomart Ensembl
5.2 years ago by mickey_95 ▴ 110
0
votes
0
replies
7.2k
views
Comment: C: ATAC-seq coverage tracks using bamCoverage from Deeptools
5.3 years ago by mickey_95 ▴ 110
0
votes
1
reply
7.2k
views
Comment: C: ATAC-seq coverage tracks using bamCoverage from Deeptools
5.3 years ago by mickey_95 ▴ 110
1
vote
4
replies
7.2k
views
ATAC-seq coverage tracks using bamCoverage from Deeptools
ATAC-seq Deeptools bamCoverage bigwig
5.3 years ago by mickey_95 ▴ 110
1
vote
1
reply
2.3k
views
Star alignment - AS and MD tags
alignment ngs Star SAM format SAM alignment tags
updated 22 months ago by ▴ 140 • written 5.4 years ago by ▴ 110
0
votes
0
replies
3.0k
views
Comment: C: Counting uniquely mapped reads - ambiguous results
5.4 years ago by mickey_95 ▴ 110
0
votes
1
reply
3.0k
views
Comment: C: Counting uniquely mapped reads - ambiguous results
5.4 years ago by mickey_95 ▴ 110
3
votes
4
replies
3.0k
views
Counting uniquely mapped reads - ambiguous results
Star alignment samtools mapping
updated 2.5 years ago by 45k • written 5.4 years ago by ▴ 110
0
votes
0
replies
5.4k
views
Comment: C: Low number of peaks and weird TSS profile
5.7 years ago by mickey_95 ▴ 110
0
votes
1
reply
5.4k
views
Comment: C: Low number of peaks and weird TSS profile
5.7 years ago by mickey_95 ▴ 110
0
votes
1
reply
5.4k
views
Comment: C: Low number of peaks and weird TSS profile
5.7 years ago by mickey_95 ▴ 110
0
votes
1
reply
5.4k
views
Comment: C: Low number of peaks and weird TSS profile
5.7 years ago by mickey_95 ▴ 110
0
votes
10
replies
5.4k
views
Low number of peaks and weird TSS profile
ATAC-seq
updated 5.7 years ago by 89k • written 5.7 years ago by ▴ 110
0
votes
0
replies
5.4k
views
Comment: C: Low number of peaks and weird TSS profile
5.7 years ago by mickey_95 ▴ 110
0
votes
0
replies
4.4k
views
Comment: C: DiffBind - normalization methods with biologically-relevant differences in signa
5.9 years ago by mickey_95 ▴ 110
0
votes
0
replies
3.4k
views
Comment: C: DESeq2 design matrix
5.9 years ago by mickey_95 ▴ 110
0
votes
1
reply
3.4k
views
Comment: C: DESeq2 design matrix
5.9 years ago by mickey_95 ▴ 110
0
votes
1
reply
3.4k
views
Comment: C: DESeq2 design matrix
5.9 years ago by mickey_95 ▴ 110
4
votes
8
replies
3.4k
views
DESeq2 design matrix
DESeq2 ATAC-seq DE analysis
updated 5.9 years ago by 89k • written 5.9 years ago by ▴ 110
0
votes
0
replies
8.7k
views
Comment: C: Convert Granges list of peaks into consensus counts
6.0 years ago by mickey_95 ▴ 110
7
votes
2
replies
4.2k
views
ATAC-seq peak calling
ATAC-seq peak calling MACS2
updated 13 months ago by ▴ 80 • written 6.0 years ago by ▴ 110
0
votes
0
replies
8.7k
views
Comment: C: Convert Granges list of peaks into consensus counts
6.0 years ago by mickey_95 ▴ 110
1
vote
1
reply
8.7k
views
Comment: C: Convert Granges list of peaks into consensus counts
6.0 years ago by mickey_95 ▴ 110
0
votes
1
reply
8.7k
views
Comment: C: Convert Granges list of peaks into consensus counts
6.0 years ago by mickey_95 ▴ 110
34 results • Page 1 of 1
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