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2
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3
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712
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Functional enrichment analysis of bacteria
GO enrichment DAVID bacteria clusterProfiler R
updated 10 weeks ago by ★ 2.5k • written 10 months ago by ▴ 40
0
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1
reply
201
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Comment: C: Size factors upon collapsing replicates in RNA-seq analysis
8 months ago by mickey_95 ▴ 40
1
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3
replies
201
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Size factors upon collapsing replicates in RNA-seq analysis
RNA-Seq DESeq2 R
8 months ago by mickey_95 ▴ 40
0
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0
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712
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Comment: C: Functional enrichment analysis of bacteria
9 months ago by mickey_95 ▴ 40
1
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1
reply
444
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Comment: C: RNA-seq expression patterns
10 months ago by mickey_95 ▴ 40
0
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1
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444
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Comment: C: RNA-seq expression patterns
10 months ago by mickey_95 ▴ 40
4
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5
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444
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RNA-seq expression patterns
rna-seq pattern analysis differential expression
10 months ago by mickey_95 ▴ 40
5
votes
2
replies
1.8k
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Finding overlaps between GRanges objects
GRanges promoter peak IRanges ChIP-Seq
updated 11 months ago by ▴ 830 • written 11 months ago by ▴ 40
6
votes
5
replies
1.3k
views
TSS metaprofile using Deeptools
Deeptools computeMatrix GTF metaprofile
updated 14 months ago by ▴ 20 • written 14 months ago by ▴ 40
0
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2
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1.3k
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Comment: C: TSS metaprofile using Deeptools
14 months ago by mickey_95 ▴ 40
0
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0
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618
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Creating TxDB objects from different sources
TxDb genome annotation Biomart Ensembl
15 months ago by mickey_95 ▴ 40
0
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0
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1.6k
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Comment: C: ATAC-seq coverage tracks using bamCoverage from Deeptools
16 months ago by mickey_95 ▴ 40
0
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1
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1.6k
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Comment: C: ATAC-seq coverage tracks using bamCoverage from Deeptools
16 months ago by mickey_95 ▴ 40
1
vote
4
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1.6k
views
ATAC-seq coverage tracks using bamCoverage from Deeptools
ATAC-seq Deeptools bamCoverage bigwig
16 months ago by mickey_95 ▴ 40
0
votes
0
replies
748
views
Star alignment - AS and MD tags
alignment ngs Star SAM format SAM alignment tags
18 months ago by mickey_95 ▴ 40
0
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0
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941
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Comment: C: Counting uniquely mapped reads - ambiguous results
18 months ago by mickey_95 ▴ 40
0
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1
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941
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Comment: C: Counting uniquely mapped reads - ambiguous results
18 months ago by mickey_95 ▴ 40
3
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4
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941
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Counting uniquely mapped reads - ambiguous results
alignment Star samtools mapping samtools view
updated 18 months ago by 54k • written 18 months ago by ▴ 40
0
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0
replies
1.2k
views
Comment: C: Low number of peaks and weird TSS profile
21 months ago by mickey_95 ▴ 40
0
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1
reply
1.2k
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Comment: C: Low number of peaks and weird TSS profile
21 months ago by mickey_95 ▴ 40
0
votes
1
reply
1.2k
views
Comment: C: Low number of peaks and weird TSS profile
21 months ago by mickey_95 ▴ 40
0
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1
reply
1.2k
views
Comment: C: Low number of peaks and weird TSS profile
21 months ago by mickey_95 ▴ 40
0
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10
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1.2k
views
Low number of peaks and weird TSS profile
ATAC-seq
updated 21 months ago by 54k • written 21 months ago by ▴ 40
0
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0
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1.2k
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Comment: C: Low number of peaks and weird TSS profile
21 months ago by mickey_95 ▴ 40
0
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0
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2.1k
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Comment: C: DiffBind - normalization methods with biologically-relevant differences in signa
23 months ago by mickey_95 ▴ 40
0
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0
replies
1.2k
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Comment: C: DESeq2 design matrix
23 months ago by mickey_95 ▴ 40
0
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1
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1.2k
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Comment: C: DESeq2 design matrix
23 months ago by mickey_95 ▴ 40
0
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1
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1.2k
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Comment: C: DESeq2 design matrix
23 months ago by mickey_95 ▴ 40
4
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8
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1.2k
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DESeq2 design matrix
DESeq2 ATAC-seq DE analysis
updated 24 months ago by 54k • written 24 months ago by ▴ 40
0
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0
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2.4k
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Comment: C: Convert Granges list of peaks into consensus counts
2.0 years ago by mickey_95 ▴ 40
4
votes
1
reply
1.6k
views
ATAC-seq peak calling
ATAC-seq peak calling MACS2
updated 2.1 years ago by 54k • written 2.1 years ago by ▴ 40
0
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0
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2.4k
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Comment: C: Convert Granges list of peaks into consensus counts
2.1 years ago by mickey_95 ▴ 40
0
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1
reply
2.4k
views
Comment: C: Convert Granges list of peaks into consensus counts
2.1 years ago by mickey_95 ▴ 40
0
votes
1
reply
2.4k
views
Comment: C: Convert Granges list of peaks into consensus counts
2.1 years ago by mickey_95 ▴ 40
34 results • Page 1 of 1
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