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2
votes
3
replies
3.4k
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Functional enrichment analysis of bacteria
GO enrichment DAVID bacteria clusterProfiler R
updated 2.7 years ago by ★ 2.6k • written 3.4 years ago by ▴ 110
0
votes
1
reply
648
views
Comment: C: Size factors upon collapsing replicates in RNA-seq analysis
3.2 years ago by mickey_95 ▴ 110
1
vote
3
replies
648
views
Size factors upon collapsing replicates in RNA-seq analysis
RNA-Seq DESeq2 R
3.2 years ago by mickey_95 ▴ 110
0
votes
0
replies
3.4k
views
Comment: C: Functional enrichment analysis of bacteria
3.3 years ago by mickey_95 ▴ 110
1
vote
1
reply
1.4k
views
Comment: C: RNA-seq expression patterns
3.4 years ago by mickey_95 ▴ 110
0
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1
reply
1.4k
views
Comment: C: RNA-seq expression patterns
3.4 years ago by mickey_95 ▴ 110
4
votes
5
replies
1.4k
views
RNA-seq expression patterns
rna-seq pattern analysis differential expression
3.4 years ago by mickey_95 ▴ 110
17
votes
2
replies
11k
views
Finding overlaps between GRanges objects
GRanges promoter peak IRanges ChIP-Seq
updated 3.4 years ago by ▴ 950 • written 3.4 years ago by ▴ 110
8
votes
5
replies
4.0k
views
TSS metaprofile using Deeptools
Deeptools computeMatrix GTF metaprofile
updated 3.7 years ago by ▴ 40 • written 3.7 years ago by ▴ 110
0
votes
2
replies
4.0k
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Comment: C: TSS metaprofile using Deeptools
3.7 years ago by mickey_95 ▴ 110
0
votes
0
replies
1.5k
views
Creating TxDB objects from different sources
TxDb genome annotation Biomart Ensembl
3.8 years ago by mickey_95 ▴ 110
0
votes
0
replies
4.8k
views
Comment: C: ATAC-seq coverage tracks using bamCoverage from Deeptools
3.9 years ago by mickey_95 ▴ 110
0
votes
1
reply
4.8k
views
Comment: C: ATAC-seq coverage tracks using bamCoverage from Deeptools
3.9 years ago by mickey_95 ▴ 110
1
vote
4
replies
4.8k
views
ATAC-seq coverage tracks using bamCoverage from Deeptools
ATAC-seq Deeptools bamCoverage bigwig
3.9 years ago by mickey_95 ▴ 110
1
vote
1
reply
1.6k
views
Star alignment - AS and MD tags
alignment ngs Star SAM format SAM alignment tags
updated 5 months ago by ▴ 140 • written 4.0 years ago by ▴ 110
0
votes
0
replies
2.3k
views
Comment: C: Counting uniquely mapped reads - ambiguous results
4.0 years ago by mickey_95 ▴ 110
0
votes
1
reply
2.3k
views
Comment: C: Counting uniquely mapped reads - ambiguous results
4.0 years ago by mickey_95 ▴ 110
3
votes
4
replies
2.3k
views
Counting uniquely mapped reads - ambiguous results
Star alignment samtools mapping
updated 13 months ago by 43k • written 4.0 years ago by ▴ 110
0
votes
0
replies
3.5k
views
Comment: C: Low number of peaks and weird TSS profile
4.3 years ago by mickey_95 ▴ 110
0
votes
1
reply
3.5k
views
Comment: C: Low number of peaks and weird TSS profile
4.3 years ago by mickey_95 ▴ 110
0
votes
1
reply
3.5k
views
Comment: C: Low number of peaks and weird TSS profile
4.3 years ago by mickey_95 ▴ 110
0
votes
1
reply
3.5k
views
Comment: C: Low number of peaks and weird TSS profile
4.3 years ago by mickey_95 ▴ 110
0
votes
10
replies
3.5k
views
Low number of peaks and weird TSS profile
ATAC-seq
updated 4.3 years ago by 82k • written 4.3 years ago by ▴ 110
0
votes
0
replies
3.5k
views
Comment: C: Low number of peaks and weird TSS profile
4.3 years ago by mickey_95 ▴ 110
0
votes
0
replies
3.4k
views
Comment: C: DiffBind - normalization methods with biologically-relevant differences in signa
4.5 years ago by mickey_95 ▴ 110
0
votes
0
replies
2.4k
views
Comment: C: DESeq2 design matrix
4.5 years ago by mickey_95 ▴ 110
0
votes
1
reply
2.4k
views
Comment: C: DESeq2 design matrix
4.5 years ago by mickey_95 ▴ 110
0
votes
1
reply
2.4k
views
Comment: C: DESeq2 design matrix
4.5 years ago by mickey_95 ▴ 110
4
votes
8
replies
2.4k
views
DESeq2 design matrix
DESeq2 ATAC-seq DE analysis
updated 4.5 years ago by 82k • written 4.5 years ago by ▴ 110
0
votes
0
replies
6.5k
views
Comment: C: Convert Granges list of peaks into consensus counts
4.6 years ago by mickey_95 ▴ 110
5
votes
1
reply
2.8k
views
ATAC-seq peak calling
ATAC-seq peak calling MACS2
updated 4.6 years ago by 82k • written 4.6 years ago by ▴ 110
0
votes
0
replies
6.5k
views
Comment: C: Convert Granges list of peaks into consensus counts
4.6 years ago by mickey_95 ▴ 110
1
vote
1
reply
6.5k
views
Comment: C: Convert Granges list of peaks into consensus counts
4.6 years ago by mickey_95 ▴ 110
0
votes
1
reply
6.5k
views
Comment: C: Convert Granges list of peaks into consensus counts
4.6 years ago by mickey_95 ▴ 110
34 results • Page 1 of 1
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