Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
403
views
Comment: Comment: Should I exclude unmapped reads and proceed with the analysis for low mapped sam
11 weeks ago by Sib ▴ 60
2
votes
4
replies
403
views
Should I exclude unmapped reads and proceed with the analysis for low mapped samples, or omit them altogether?
STAR mapping RNAseq
updated 11 weeks ago by ★ 1.9k • written 11 weeks ago by ▴ 60
0
votes
0
replies
492
views
Comment: Comment: Is there anything we can do when we have assignment rate below 50% in featurecou
10 months ago by Sib ▴ 60
0
votes
2
replies
492
views
Is there anything we can do when we have assignment rate below 50% in featurecounts?
RNA-seq featurecounts
updated 10 months ago by 43k • written 10 months ago by ▴ 60
0
votes
0
replies
361
views
How are the reads assigned to genes in strand-specific RNAseq libraries?
strand-specific strandness RNAseq
10 months ago by Sib ▴ 60
0
votes
1
reply
755
views
Comment: Comment: What is the benefit of knowing the source of contamination when we have RNAseq d
11 months ago by Sib ▴ 60
1
vote
3
replies
755
views
What is the benefit of knowing the source of contamination when we have RNAseq data with less than 70% mapping?
alignment mapping STAR contamination RNAseq
11 months ago by Sib ▴ 60
0
votes
0
replies
897
views
Comment: Comment: Low mapping percentage
11 months ago by Sib ▴ 60
2
votes
3
replies
897
views
Low mapping percentage
mapping STAR RNAseq
11 months ago by Sib ▴ 60
1
vote
2
replies
798
views
Why my application works well but when I try to modularize it, it doesn't work properly ?
Shinymodule app Shinyapp Shiny module
17 months ago by Sib ▴ 60
0
votes
0
replies
798
views
Answer: Answer: Why my application works well but when I try to modularize it, it doesn't work p
17 months ago by Sib ▴ 60
6
votes
7
replies
2.1k
views
How to understand logics and statistical concepts behind limma package?
R microarray DGE limma
updated 2.5 years ago by 141k • written 2.5 years ago by ▴ 60
0
votes
0
replies
2.1k
views
Answer: Answer: How to understand logics and statistical concepts behind limma package?
2.5 years ago by Sib ▴ 60
0
votes
2
replies
2.1k
views
Comment: Comment: How to understand logics and statistical concepts behind limma package?
2.5 years ago by Sib ▴ 60
0
votes
0
replies
512
views
Using machine learning methods to find a biomarker panel to diagnose a disease.
Machine-learning feature-selection training-dataset Biomarker RNAseq
2.6 years ago by Sib ▴ 60
0
votes
0
replies
875
views
Error in ReadAffy function
ReadAffy Microarray R
2.7 years ago by Sib ▴ 60
1
vote
0
replies
3.8k
views
Comment: Comment: Error in ComBat function: Error in dat[, batch == batch_level] : (subscript)
2.9 years ago by Sib ▴ 60
0
votes
1
reply
3.8k
views
Comment: Comment: Error in ComBat function: Error in dat[, batch == batch_level] : (subscript)
2.9 years ago by Sib ▴ 60
3
votes
4
replies
3.8k
views
Error in ComBat function: Error in dat[, batch == batch_level] : (subscript) logical subscript too long
Batch-effect microarray R
updated 15 days ago by 43k • written 2.9 years ago by ▴ 60
0
votes
0
replies
821
views
Comment: Comment: Is it correct to merge two raw CEL datasets and then perform quality control, ba
2.9 years ago by Sib ▴ 60
0
votes
2
replies
821
views
Is it correct to merge two raw CEL datasets and then perform quality control, background correction, and normalization on it?
R microarray affymetrix batch-effect quality-control
updated 15 days ago by 43k • written 2.9 years ago by ▴ 60
1
vote
11
replies
2.7k
views
Error in volcano plot drawing with R.
R
updated 3.5 years ago by ★ 7.1k • written 4.4 years ago by ▴ 60
0
votes
1
reply
1.3k
views
Comment: C: Can anyone introduce me a free tool for finding upstream regulators of different
3.6 years ago by Sib ▴ 60
4
votes
3
replies
1.3k
views
Can anyone introduce me a free tool for finding upstream regulators of differentially expressed genes?
upstream regulators enrichment analysis RNA-Seq
3.6 years ago by Sib ▴ 60
0
votes
0
replies
6.7k
views
Comment: C: How can I put the Rtools on PATH?
3.9 years ago by Sib ▴ 60
0
votes
2
replies
6.7k
views
How can I put the Rtools on PATH?
R
updated 3.9 years ago by 82k • written 3.9 years ago by ▴ 60
0
votes
0
replies
1.3k
views
Comment: C: Is there a need for background correction and substitution of duplicates with th
4.3 years ago by Sib ▴ 60
0
votes
1
reply
1.3k
views
Comment: C: Is there a need for background correction and substitution of duplicates with th
4.3 years ago by Sib ▴ 60
0
votes
5
replies
1.3k
views
Is there a need for background correction and substitution of duplicates with the mean when we use the getGEO function of R in microarray analysis?
R GEO Microarray analysis
4.3 years ago by Sib ▴ 60
0
votes
1
reply
2.1k
views
Comment: C: In R scripts of GEO2R which line is responsible for background correction and re
4.3 years ago by Sib ▴ 60
7
votes
5
replies
2.1k
views
In R scripts of GEO2R which line is responsible for background correction and replacing replicated probes with the mean?
R Differential expression analysis
4.3 years ago by Sib ▴ 60
0
votes
0
replies
3.1k
views
Comment: C: Error in plotting Enhanced Volcano plot
4.3 years ago by Sib ▴ 60
0
votes
1
reply
3.1k
views
Comment: C: Error in plotting Enhanced Volcano plot
4.3 years ago by Sib ▴ 60
2
votes
4
replies
3.1k
views
Error in plotting Enhanced Volcano plot
differential expression analysis enhanced volcano
updated 4.3 years ago by ★ 5.9k • written 4.3 years ago by ▴ 60
0
votes
1
reply
2.7k
views
Comment: C: Error in volcano plot drawing with R.
4.3 years ago by Sib ▴ 60
0
votes
1
reply
2.7k
views
Comment: C: Error in volcano plot drawing with R.
4.3 years ago by Sib ▴ 60
0
votes
0
replies
2.7k
views
Comment: C: Error in volcano plot drawing with R.
4.3 years ago by Sib ▴ 60
0
votes
1
reply
2.7k
views
Comment: C: Error in volcano plot drawing with R.
4.3 years ago by Sib ▴ 60
0
votes
0
replies
1.3k
views
Comment: C: After differential expression analysis if we use gene symbols for further analys
4.4 years ago by Sib ▴ 60
0
votes
0
replies
1.1k
views
Comment: C: String db knows some gene symbols of DEGs for more than one protein and after e
4.4 years ago by Sib ▴ 60
3
votes
4
replies
1.3k
views
After differential expression analysis if we use gene symbols for further analysis we lose some DEGs. Is it ok?
Differential expression analysis GEO
4.4 years ago by Sib ▴ 60
0
votes
1
reply
1.3k
views
Comment: C: After differential expression analysis if we use gene symbols for further analys
4.4 years ago by Sib ▴ 60
0
votes
1
reply
1.5k
views
Comment: C: Expression correlation tool
4.4 years ago by Sib ▴ 60
2
votes
2
replies
1.1k
views
String db knows some gene symbols of DEGs for more than one protein and after entering gene symbols ask to select the desiered gene.
R Cytoscape String app network visualization
updated 4.4 years ago by ▴ 620 • written 4.4 years ago by ▴ 60
3
votes
1
reply
2.0k
views
Differentially expressed genes visualization with Cytoscape
Cytoscape PPI network visualization
updated 4.4 years ago by ▴ 140 • written 4.4 years ago by ▴ 60
0
votes
2
replies
4.6k
views
Comment: C: What this error means?Error in getEAWP(object) : data object isn't of a recogniz
4.4 years ago by Sib ▴ 60
0
votes
0
replies
4.6k
views
Comment: C: What this error means?Error in getEAWP(object) : data object isn't of a recogniz
4.4 years ago by Sib ▴ 60
0
votes
1
reply
4.6k
views
Comment: C: What this error means?Error in getEAWP(object) : data object isn't of a recogniz
4.4 years ago by Sib ▴ 60
2
votes
9
replies
4.6k
views
What this error means?Error in getEAWP(object) : data object isn't of a recognized data class
software error R
4.4 years ago by Sib ▴ 60
0
votes
0
replies
9.5k
views
Comment: C: How to prepare a input data for Cytoscape, genetic network software
4.4 years ago by Sib ▴ 60
63 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6