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Why my application works well but when I try to modularize it, it doesn't work properly ?
Shinymodule app Shinyapp Shiny module
6 months ago by Sib ▴ 40
0
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0
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569
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Answer: Answer: Why my application works well but when I try to modularize it, it doesn't work p
6 months ago by Sib ▴ 40
6
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7
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1.4k
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How to understand logics and statistical concepts behind limma package?
R microarray DGE limma
updated 19 months ago by 129k • written 19 months ago by ▴ 40
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1.4k
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Answer: Answer: How to understand logics and statistical concepts behind limma package?
19 months ago by Sib ▴ 40
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2
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1.4k
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Comment: Comment: How to understand logics and statistical concepts behind limma package?
19 months ago by Sib ▴ 40
0
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0
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364
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Using machine learning methods to find a biomarker panel to diagnose a disease.
Machine-learning feature-selection training-dataset Biomarker RNAseq
20 months ago by Sib ▴ 40
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0
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652
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Error in ReadAffy function
ReadAffy Microarray R
21 months ago by Sib ▴ 40
1
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0
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2.6k
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Comment: Comment: Error in ComBat function: Error in dat[, batch == batch_level] : (subscript)
23 months ago by Sib ▴ 40
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1
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2.6k
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Comment: Comment: Error in ComBat function: Error in dat[, batch == batch_level] : (subscript)
23 months ago by Sib ▴ 40
3
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4
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2.6k
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Error in ComBat function: Error in dat[, batch == batch_level] : (subscript) logical subscript too long
Batcheffectremoval R microarray Error
23 months ago by Sib ▴ 40
0
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0
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609
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Comment: Comment: Is it correct to merge two raw CEL datasets and then perform quality control, ba
23 months ago by Sib ▴ 40
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2
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609
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Is it correct to merge two raw CEL datasets and then perform quality control, background correction, and normalization on it?
R affymetrix qualitycontrol microarray batcheffectremoval
23 months ago by Sib ▴ 40
1
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11
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2.0k
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Error in volcano plot drawing with R.
R
updated 2.6 years ago by ★ 6.1k • written 3.4 years ago by ▴ 40
0
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1
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872
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Comment: C: Can anyone introduce me a free tool for finding upstream regulators of different
2.7 years ago by Sib ▴ 40
2
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3
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872
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Can anyone introduce me a free tool for finding upstream regulators of differentially expressed genes?
upstream regulators enrichment analysis RNA-Seq
2.7 years ago by Sib ▴ 40
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0
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6.2k
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Comment: C: How can I put the Rtools on PATH?
3.0 years ago by Sib ▴ 40
0
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2
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6.2k
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How can I put the Rtools on PATH?
R
updated 3.0 years ago by 72k • written 3.0 years ago by ▴ 40
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0
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994
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Comment: C: Is there a need for background correction and substitution of duplicates with th
3.4 years ago by Sib ▴ 40
0
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1
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994
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Comment: C: Is there a need for background correction and substitution of duplicates with th
3.4 years ago by Sib ▴ 40
0
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5
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994
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Is there a need for background correction and substitution of duplicates with the mean when we use the getGEO function of R in microarray analysis?
R GEO Microarray analysis
3.4 years ago by Sib ▴ 40
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1
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1.7k
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Comment: C: In R scripts of GEO2R which line is responsible for background correction and re
3.4 years ago by Sib ▴ 40
7
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5
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1.7k
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In R scripts of GEO2R which line is responsible for background correction and replacing replicated probes with the mean?
R Differential expression analysis
3.4 years ago by Sib ▴ 40
0
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0
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2.5k
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Comment: C: Error in plotting Enhanced Volcano plot
3.4 years ago by Sib ▴ 40
0
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1
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2.5k
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Comment: C: Error in plotting Enhanced Volcano plot
3.4 years ago by Sib ▴ 40
2
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4
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2.5k
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Error in plotting Enhanced Volcano plot
differential expression analysis enhanced volcano
updated 3.4 years ago by ★ 4.2k • written 3.4 years ago by ▴ 40
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1
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2.0k
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Comment: C: Error in volcano plot drawing with R.
3.4 years ago by Sib ▴ 40
0
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1
reply
2.0k
views
Comment: C: Error in volcano plot drawing with R.
3.4 years ago by Sib ▴ 40
0
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0
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2.0k
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Comment: C: Error in volcano plot drawing with R.
3.4 years ago by Sib ▴ 40
0
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1
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2.0k
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Comment: C: Error in volcano plot drawing with R.
3.4 years ago by Sib ▴ 40
0
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0
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992
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Comment: C: After differential expression analysis if we use gene symbols for further analys
3.4 years ago by Sib ▴ 40
0
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0
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871
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Comment: C: String db knows some gene symbols of DEGs for more than one protein and after e
3.4 years ago by Sib ▴ 40
3
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4
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992
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After differential expression analysis if we use gene symbols for further analysis we lose some DEGs. Is it ok?
Differential expression analysis GEO
3.4 years ago by Sib ▴ 40
0
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1
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992
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Comment: C: After differential expression analysis if we use gene symbols for further analys
3.4 years ago by Sib ▴ 40
0
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1
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1.3k
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Comment: C: Expression correlation tool
3.4 years ago by Sib ▴ 40
2
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2
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871
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String db knows some gene symbols of DEGs for more than one protein and after entering gene symbols ask to select the desiered gene.
R Cytoscape String app network visualization
updated 3.5 years ago by ▴ 600 • written 3.5 years ago by ▴ 40
3
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1
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1.8k
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Differentially expressed genes visualization with Cytoscape
Cytoscape PPI network visualization
updated 3.5 years ago by ▴ 120 • written 3.5 years ago by ▴ 40
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2
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3.3k
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Comment: C: What this error means?Error in getEAWP(object) : data object isn't of a recogniz
3.5 years ago by Sib ▴ 40
0
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0
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3.3k
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Comment: C: What this error means?Error in getEAWP(object) : data object isn't of a recogniz
3.5 years ago by Sib ▴ 40
0
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1
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3.3k
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Comment: C: What this error means?Error in getEAWP(object) : data object isn't of a recogniz
3.5 years ago by Sib ▴ 40
2
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9
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3.3k
views
What this error means?Error in getEAWP(object) : data object isn't of a recognized data class
software error R
3.5 years ago by Sib ▴ 40
0
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0
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9.1k
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Comment: C: How to prepare a input data for Cytoscape, genetic network software
3.5 years ago by Sib ▴ 40
0
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0
replies
908
views
Comment: C: which ID of differentially expressed genes from the result page of the GEO2R is
3.5 years ago by Sib ▴ 40
1
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2
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908
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which ID of differentially expressed genes from the result page of the GEO2R is used to the construction of the Protein-Protein interaction network i…
gene
3.5 years ago by Sib ▴ 40
0
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0
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3.5k
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Comment: C: How to obtain gene symbols from the result list of GEO2R?
3.5 years ago by Sib ▴ 40
3
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6
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3.5k
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How to obtain gene symbols from the result list of GEO2R?
rna-seq R
updated 3.5 years ago by ▴ 70 • written 3.5 years ago by ▴ 40
0
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1
reply
3.5k
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Comment: C: How to obtain gene symbols from the result list of GEO2R?
3.5 years ago by Sib ▴ 40
0
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0
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1.6k
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Comment: C: Are gene symbol and HGNC symbol the same names for a gene?
3.5 years ago by Sib ▴ 40
0
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1
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1.6k
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Comment: C: Are gene symbol and HGNC symbol the same names for a gene?
3.5 years ago by Sib ▴ 40
0
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1
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1.6k
views
Comment: C: Are gene symbol and HGNC symbol the same names for a gene?
3.5 years ago by Sib ▴ 40
7
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6
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1.6k
views
Are gene symbol and HGNC symbol the same names for a gene?
gene RNA-Seq
updated 3.5 years ago by ★ 4.2k • written 3.5 years ago by ▴ 40
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