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Comment: Comment: Samtools index not working in Snakemake
28 days ago by Begonia_pavonina ▴ 120
3
votes
2
replies
366
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Samtools index not working in Snakemake
snakemake samtools
updated 28 days ago by 12k • written 28 days ago by ▴ 120
0
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1
reply
374
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Comment: Comment: Conda environment not named
4 weeks ago by Begonia_pavonina ▴ 120
0
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0
replies
374
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Comment: Comment: Conda environment not named
4 weeks ago by Begonia_pavonina ▴ 120
5
votes
4
replies
374
views
Conda environment not named
snakemake conda
updated 4 weeks ago by 41k • written 4 weeks ago by ▴ 120
0
votes
0
replies
730
views
Comment: Comment: Snakemake issue with wrappers
4 weeks ago by Begonia_pavonina ▴ 120
0
votes
1
reply
730
views
Comment: Comment: Snakemake issue with wrappers
5 weeks ago by Begonia_pavonina ▴ 120
4
votes
9
replies
730
views
Snakemake issue with wrappers
Python Snakemake
4 weeks ago by Begonia_pavonina ▴ 120
0
votes
1
reply
730
views
Comment: Comment: Snakemake issue with wrappers
5 weeks ago by Begonia_pavonina ▴ 120
0
votes
1
reply
730
views
Comment: Comment: Snakemake issue with wrappers
5 weeks ago by Begonia_pavonina ▴ 120
0
votes
0
replies
730
views
Comment: Comment: Snakemake issue with wrappers
5 weeks ago by Begonia_pavonina ▴ 120
0
votes
1
reply
633
views
Comment: Comment: Wildcards in Snakemake
7 weeks ago by Begonia_pavonina ▴ 120
0
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1
reply
633
views
Comment: Comment: Wildcards in Snakemake
7 weeks ago by Begonia_pavonina ▴ 120
0
votes
1
reply
633
views
Comment: Comment: Wildcards in Snakemake
7 weeks ago by Begonia_pavonina ▴ 120
0
votes
2
replies
633
views
Comment: Comment: Wildcards in Snakemake
7 weeks ago by Begonia_pavonina ▴ 120
5
votes
9
replies
633
views
Wildcards in Snakemake
Python workflow Snakemake wrapper
updated 7 weeks ago by 22k • written 7 weeks ago by ▴ 120
1
vote
1
reply
320
views
Manage the wrappers in Snakemake
snakemake python
updated 9 weeks ago by 41k • written 9 weeks ago by ▴ 120
0
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0
replies
645
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Comment: Comment: Snakemake alignment script
9 weeks ago by Begonia_pavonina ▴ 120
4
votes
5
replies
645
views
Snakemake alignment script
snakemake alignment
9 weeks ago by Begonia_pavonina ▴ 120
0
votes
1
reply
645
views
Comment: Comment: Snakemake alignment script
10 weeks ago by Begonia_pavonina ▴ 120
0
votes
0
replies
645
views
Comment: Comment: Snakemake alignment script
10 weeks ago by Begonia_pavonina ▴ 120
0
votes
1
reply
660
views
Comment: Comment: The GATK "The given bam input has no sample names." error
3 months ago by Begonia_pavonina ▴ 120
0
votes
2
replies
660
views
Comment: Comment: The GATK "The given bam input has no sample names." error
3 months ago by Begonia_pavonina ▴ 120
3
votes
6
replies
660
views
The GATK "The given bam input has no sample names." error
GATK BWA
updated 3 months ago by 136k • written 3 months ago by ▴ 120
0
votes
0
replies
1.0k
views
Comment: Comment: From VCF to BEAGLE format with multiple chromosomes
6 months ago by Begonia_pavonina ▴ 120
0
votes
1
reply
1.0k
views
Comment: Comment: From VCF to BEAGLE format with multiple chromosomes
7 months ago by Begonia_pavonina ▴ 120
2
votes
1
reply
552
views
Calculate the kinship matrix from NGS data
PCangsd kinship BEAGLE ANGSD
updated 8 months ago by 10k • written 8 months ago by ▴ 120
0
votes
0
replies
567
views
How to get BEAGLE files from VCF with angsd?
angsd vcf populationgenetics beagle pcangsd
8 months ago by Begonia_pavonina ▴ 120
0
votes
1
reply
779
views
Comment: Comment: Using vcfR to group variants per annotations
9 months ago by Begonia_pavonina ▴ 120
3
votes
3
replies
779
views
Using vcfR to group variants per annotations
vcf vcfR R
updated 9 months ago by ▴ 890 • written 9 months ago by ▴ 120
0
votes
0
replies
916
views
Comment: Comment: Filter out overlapping deletions from a VCF file.
9 months ago by Begonia_pavonina ▴ 120
0
votes
1
reply
916
views
Comment: Comment: Filter out overlapping deletions from a VCF file.
9 months ago by Begonia_pavonina ▴ 120
1
vote
4
replies
916
views
Filter out overlapping deletions from a VCF file.
vcf bcftools gvcf
9 months ago by Begonia_pavonina ▴ 120
0
votes
4
replies
1.0k
views
From VCF to BEAGLE format with multiple chromosomes
vcf vcftools beagle gvcf
6 months ago by Begonia_pavonina ▴ 120
0
votes
0
replies
315
views
Plot Phylogenetic tree with traits in Biopython
Biopython Phylo Python Phylogeny
13 months ago by Begonia_pavonina ▴ 120
1
vote
1
reply
902
views
Labels colors in Bio.Phylo
Bio.Phylo Python BioPython
updated 13 months ago by 3.2k • written 14 months ago by ▴ 120
1
vote
0
replies
807
views
Comment: Comment: Bootstraps values in iqtree
14 months ago by Begonia_pavonina ▴ 120
3
votes
2
replies
807
views
Bootstraps values in iqtree
iqtree
14 months ago by Begonia_pavonina ▴ 120
5
votes
4
replies
1.3k
views
IQ-TREE stuck in selecting a substitution model with ModelFinder
substitution ModelFInder model IQ-TREE
updated 6 months ago by ▴ 780 • written 17 months ago by ▴ 120
0
votes
1
reply
1.3k
views
Comment: Comment: IQ-TREE stuck in selecting a substitution model with ModelFinder
16 months ago by Begonia_pavonina ▴ 120
0
votes
2
replies
1.2k
views
Answer: Answer: GenotypeGVCF too many genotypes from pooled samples
17 months ago by Begonia_pavonina ▴ 120
0
votes
0
replies
6.9k
views
Comment: Comment: Question about ROH analysis by Plink 1.9
17 months ago by Begonia_pavonina ▴ 120
0
votes
0
replies
3.8k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
22 months ago by Begonia_pavonina ▴ 120
0
votes
1
reply
3.8k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
22 months ago by Begonia_pavonina ▴ 120
0
votes
1
reply
3.8k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
22 months ago by Begonia_pavonina ▴ 120
0
votes
2
replies
3.8k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
22 months ago by Begonia_pavonina ▴ 120
7
votes
12
replies
3.8k
views
Snakemake 'Unexpected keyword ref in rule definition'
snakemake python
updated 22 months ago by 21k • written 22 months ago by ▴ 120
0
votes
1
reply
3.8k
views
Answer: Answer: Snakemake 'Unexpected keyword ref in rule definition'
22 months ago by Begonia_pavonina ▴ 120
0
votes
0
replies
657
views
Comment: Comment: Multiple samples in PLINK
22 months ago by Begonia_pavonina ▴ 120
1
vote
2
replies
657
views
Multiple samples in PLINK
gvcf plink roh variants
22 months ago by Begonia_pavonina ▴ 120
103 results • Page 1 of 3
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