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How to create a proper design matrix/contrast matrix for methylation 850k analysis in limma?
850k methylation analysis R limma design matrix
updated 4.3 years ago by • 0 • written 5.7 years ago by ▴ 140
1
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0
replies
3.5k
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Comment: Comment: Question regarding TCGA and TCGAbiolinks --> RNAseq data as HTseq-Counts, FPKM,
4.6 years ago by mario.red8976 ▴ 140
2
votes
2
replies
3.5k
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Question regarding TCGA and TCGAbiolinks --> RNAseq data as HTseq-Counts, FPKM, FPKM-UQ
RNAseq FPKM-UQ FPKM TCGAbiolinks TCGA
4.6 years ago by mario.red8976 ▴ 140
0
votes
3
replies
958
views
Problem installing bioconductor package 'sesameData' (R 4.0, Bioc 3.12)
R bioconductor sesameData sesame TCGAbiolinks
4.6 years ago by mario.red8976 ▴ 140
0
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0
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958
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Comment: C: Problem installing bioconductor package 'sesameData '
4.6 years ago by mario.red8976 ▴ 140
0
votes
1
reply
2.9k
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Comment: C: RnBeads error running rnb.run.dj()
4.7 years ago by mario.red8976 ▴ 140
0
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0
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1.8k
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Answer: A: how to debug error in RnBeads Mac mini 10.15.7 R 4.0.3
4.7 years ago by mario.red8976 ▴ 140
2
votes
5
replies
2.9k
views
RnBeads error running rnb.run.dj()
ngs rnbeads methylation
updated 2.6 years ago by 45k • written 4.7 years ago by ▴ 140
0
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0
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2.9k
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Comment: C: RnBeads error loading the GUI
4.7 years ago by mario.red8976 ▴ 140
0
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1
reply
2.8k
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Comment: C: How to export molecular action between nodes from String PPI network?
5.2 years ago by mario.red8976 ▴ 140
0
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3
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2.8k
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How to export molecular action between nodes from String PPI network?
PPI network string systems-biology
updated 2.4 years ago by 45k • written 5.3 years ago by ▴ 140
0
votes
1
reply
21k
views
Comment: C: Combining GSEA (Gene Set Enrichment analysis) and DEG (Differentially Expressed
5.2 years ago by mario.red8976 ▴ 140
3
votes
1
reply
21k
views
Comment: C: Combining GSEA (Gene Set Enrichment analysis) and DEG (Differentially Expressed
5.2 years ago by mario.red8976 ▴ 140
4
votes
3
replies
21k
views
Answer: A: Combining GSEA (Gene Set Enrichment analysis) and DEG (Differentially Expressed
5.3 years ago by mario.red8976 ▴ 140
1
vote
1
reply
2.2k
views
Answer: A: DNA methylation integrated package
5.5 years ago by mario.red8976 ▴ 140
0
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0
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7.4k
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Comment: C: How to do Disease-Free survival analysis with TCGA data ??
5.5 years ago by mario.red8976 ▴ 140
0
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1
reply
7.4k
views
Comment: C: How to do Disease-Free survival analysis with TCGA data ??
5.5 years ago by mario.red8976 ▴ 140
2
votes
8
replies
7.4k
views
How to do Disease-Free survival analysis with TCGA data ??
tcga survival analysis disease-free survival R
updated 3.3 years ago by 45k • written 5.5 years ago by ▴ 140
1
vote
1
reply
7.8k
views
Answer: A: Appropriate Pipeline for Methylation EPIC array analysis?
5.5 years ago by mario.red8976 ▴ 140
0
votes
0
replies
2.7k
views
Comment: A: What is the best way to analyze and enrich a list of DE genes from RNAseq?
5.6 years ago by mario.red8976 ▴ 140
2
votes
4
replies
2.7k
views
What is the best way to analyze and enrich a list of DE genes from RNAseq?
R pathways enrichment RNA-Seq
updated 2.4 years ago by 45k • written 5.6 years ago by ▴ 140
2
votes
4
replies
2.2k
views
How to check for the presence/absence of unique rows in two different matrices?
R RStudio matrix
updated 2.4 years ago by 45k • written 5.7 years ago by ▴ 140
1
vote
0
replies
2.2k
views
Answer: A: How to check for the presence/absence of unique rows in two different matrices?
5.7 years ago by mario.red8976 ▴ 140
0
votes
0
replies
2.2k
views
Comment: Comment: How to check for the presence/absence of unique rows in two different matrices?
5.7 years ago by mario.red8976 ▴ 140
0
votes
0
replies
3.1k
views
Comment: A: How to create a proper design matrix/contrast matrix for methylation 850k analys
5.7 years ago by mario.red8976 ▴ 140
0
votes
1
reply
3.1k
views
Comment: A: How to create a proper design matrix/contrast matrix for methylation 850k analys
5.7 years ago by mario.red8976 ▴ 140
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