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Answer:
A: Trinity assembly result check
updated 4.8 years ago by
Ram
44k • written 8.8 years ago by
rtliu
★ 2.2k
0
votes
0
replies
6.2k
views
Answer:
A: How to write effective and stable bioinformatics pipeline in R ?
updated 4.9 years ago by
Ram
44k • written 10.0 years ago by
rtliu
★ 2.2k
2
votes
0
replies
11k
views
Answer:
A: cannot import pysam. Module has no attribute error
updated 4.9 years ago by
Ram
44k • written 9.2 years ago by
rtliu
★ 2.2k
11
votes
1
reply
134k
views
Answer:
A: Fastq Convert To Fasta
updated 4.9 years ago by
Ram
44k • written 10.9 years ago by
rtliu
★ 2.2k
0
votes
2
replies
5.9k
views
Comment:
C: exact command for read normalization using trinity software
updated 5.0 years ago by
Ram
44k • written 9.9 years ago by
rtliu
★ 2.2k
2
votes
1
reply
5.9k
views
Answer:
A: exact command for read normalization using trinity software
updated 5.0 years ago by
Ram
44k • written 9.9 years ago by
rtliu
★ 2.2k
0
votes
1
reply
3.1k
views
Answer:
A: What should be the minimum 454 read (single-end) length for de novo assembly run
updated 5.0 years ago by
Ram
44k • written 9.9 years ago by
rtliu
★ 2.2k
1
vote
1
reply
3.6k
views
Answer:
A: how to set CPU with butterfly dependency RAM (bflyHeapSpaceMax) in trinity assem
updated 5.0 years ago by
Ram
44k • written 9.9 years ago by
rtliu
★ 2.2k
0
votes
1
reply
3.6k
views
Comment:
C: how to set CPU with butterfly dependency RAM (bflyHeapSpaceMax) in trinity assem
updated 5.0 years ago by
Ram
44k • written 9.9 years ago by
rtliu
★ 2.2k
1
vote
1
reply
4.0k
views
Answer:
A: FASTQC can't detect short overrepresented sequences (e.g., less than 25 bp)?
updated 5.0 years ago by
Ram
44k • written 9.9 years ago by
rtliu
★ 2.2k
4
votes
1
reply
6.7k
views
Answer:
A: How come that the Trinity assembler seems to work on a computer with low memory
updated 5.0 years ago by
Ram
44k • written 10.0 years ago by
rtliu
★ 2.2k
4
votes
1
reply
8.5k
views
Answer:
A: Roche 454: How to know if reads are paired ?
updated 5.0 years ago by
Ram
44k • written 10.1 years ago by
rtliu
★ 2.2k
1
vote
1
reply
5.8k
views
Comment:
A: samtools/bcftools/htslib 1.0 released
updated 5.0 years ago by
Ram
44k • written 10.2 years ago by
rtliu
★ 2.2k
4
votes
2
replies
3.2k
views
News:
NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI
DNA-Seq
NGS
RNA-Seq
updated 18 months ago by
Ram
44k • written 9.0 years ago by
rtliu
★ 2.2k
0
votes
0
replies
2.1k
views
Answer:
Answer: Assemble a segment of genome denovo
updated 2.1 years ago by
Ram
44k • written 9.0 years ago by
rtliu
★ 2.2k
4
votes
0
replies
2.9k
views
News:
Python for Scientists - FREE Ebook from O'Reilly
python
Data-Analysis
updated 18 months ago by
Ram
44k • written 9.1 years ago by
rtliu
★ 2.2k
1
vote
1
reply
2.9k
views
Answer:
A: How to set parameters for SOAPdenovo-Trans
9.1 years ago by
rtliu
★ 2.2k
2
votes
1
reply
10k
views
Comment:
Comment: Install HGAP for de novo PacBio Assembly
updated 2.1 years ago by
Ram
44k • written 9.1 years ago by
rtliu
★ 2.2k
1
vote
1
reply
3.5k
views
Comment:
C: Error with SRA downloaded reads and SPAdes 3.1.0
9.1 years ago by
rtliu
★ 2.2k
0
votes
0
replies
2.4k
views
News:
Coursera Bioinformatics Specialization will start in August 31 2015
Coursera
updated 2.0 years ago by
Ram
44k • written 9.1 years ago by
rtliu
★ 2.2k
6
votes
0
replies
1.8k
views
News:
BOSC 2015 slides and videos
BOSC
BOSC2015
updated 23 months ago by
Ram
44k • written 9.2 years ago by
rtliu
★ 2.2k
2
votes
1
reply
4.1k
views
Answer:
Answer: dependency plyr in R 2.15.1
updated 22 months ago by
Ram
44k • written 9.2 years ago by
rtliu
★ 2.2k
1
vote
0
replies
2.1k
views
Answer:
Answer: how to work with sff file generate from roche_454
updated 22 months ago by
Ram
44k • written 9.2 years ago by
rtliu
★ 2.2k
2
votes
0
replies
5.8k
views
Answer:
Answer: ipython notebooks on bioinformatics and genomics
updated 22 months ago by
Ram
44k • written 9.2 years ago by
rtliu
★ 2.2k
0
votes
2
replies
2.8k
views
Answer:
Answer: Script to assess the transcriptome assembly quality in terms of blastx and tblas
updated 20 months ago by
Ram
44k • written 9.4 years ago by
rtliu
★ 2.2k
9
votes
1
reply
12k
views
Answer:
Answer: How to randamly extract reads from a FASTQ file?
updated 20 months ago by
Ram
44k • written 9.4 years ago by
rtliu
★ 2.2k
0
votes
0
replies
54k
views
Answer:
Answer: how to unzip the files in batch?
updated 21 months ago by
Ram
44k • written 9.4 years ago by
rtliu
★ 2.2k
0
votes
0
replies
5.0k
views
Comment:
Comment: Error during Trinity running with the recent version?
updated 2.5 years ago by
Ram
44k • written 9.4 years ago by
rtliu
★ 2.2k
9
votes
2
replies
14k
views
News:
Bio-Linux 8 is now available
genome
rna-seq
alignment
Assembly
next-gen
updated 2.8 years ago by
Ram
44k • written 10.2 years ago by
rtliu
★ 2.2k
1
vote
1
reply
21k
views
Answer:
Answer: Recommendations For Heterozygous Genome Assembly Software
updated 21 months ago by
Ram
44k • written 9.5 years ago by
rtliu
★ 2.2k
1
vote
1
reply
14k
views
Comment:
Comment: Pacbio: extract fastq from h5 file based on quality filtering
updated 2.5 years ago by
Ram
44k • written 9.5 years ago by
rtliu
★ 2.2k
20
votes
3
replies
2.8k
views
News:
Nature Comment: Core services: Reward bioinformaticians
career-path
updated 2.3 years ago by
Ram
44k • written 9.5 years ago by
rtliu
★ 2.2k
0
votes
0
replies
1.8k
views
Answer:
A: Pacbio Smrtanalysis Ova Image?
9.5 years ago by
rtliu
★ 2.2k
1
vote
1
reply
7.2k
views
Comment:
C: Trimmomatic not able to remove low sequence bases
9.5 years ago by
rtliu
★ 2.2k
0
votes
1
reply
3.6k
views
Comment:
Comment: Different results with BLAST depending on if subject is formatted database or FA
updated 2.3 years ago by
Ram
44k • written 9.5 years ago by
rtliu
★ 2.2k
1
vote
1
reply
3.6k
views
Answer:
Answer: Different results with BLAST depending on if subject is formatted database or FA
updated 2.3 years ago by
Ram
44k • written 9.5 years ago by
rtliu
★ 2.2k
3
votes
1
reply
7.2k
views
Answer:
A: Trimmomatic not able to remove low sequence bases
9.5 years ago by
rtliu
★ 2.2k
3
votes
0
replies
3.6k
views
Answer:
A: script to check the size of given contig
9.6 years ago by
rtliu
★ 2.2k
1
vote
0
replies
5.3k
views
Answer:
Answer: High quality de novo transcriptome assembly rely on merging multiple assembly?
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
rtliu
★ 2.2k
4
votes
0
replies
13k
views
Answer:
Answer: RNA-seq differential expression analysis, which aligner to choose between BWA/to
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
rtliu
★ 2.2k
4
votes
0
replies
11k
views
Answer:
Answer: what is the Hiseq 2000 adaptor sequences
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
rtliu
★ 2.2k
3
votes
0
replies
13k
views
Answer:
Answer: NGS reads simulation
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
rtliu
★ 2.2k
3
votes
1
reply
12k
views
Answer:
Answer: Best book for (practical) Next Generation Sequencing Bioinformatics?
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
rtliu
★ 2.2k
1
vote
1
reply
5.1k
views
Answer:
Answer: Error correction in sequence Assembly
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
rtliu
★ 2.2k
2
votes
0
replies
7.6k
views
Answer:
Answer: Assembler for large genome de novo assembly with Illumina paired end reads of 15
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
rtliu
★ 2.2k
0
votes
0
replies
6.6k
views
Answer:
Answer: Problems in use of seqtk subseq
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
rtliu
★ 2.2k
7
votes
0
replies
74k
views
Answer:
Answer: combining fasta files
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
rtliu
★ 2.2k
3
votes
0
replies
3.2k
views
News:
Statistics and R for the Life Sciences from Harvard University (Start: 19 Jan 2015)
edX
statistics
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
rtliu
★ 2.2k
0
votes
0
replies
1.9k
views
Answer:
Answer: optical map & assembly
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
rtliu
★ 2.2k
1
vote
1
reply
12k
views
Answer:
Answer: Which Phred value to use in trimming
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
rtliu
★ 2.2k
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