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10x VDJ (TCR/BCR) BAM to fastq
TCR VDJ BCR 10x
updated 29 days ago by 142k • written 29 days ago by ★ 2.0k
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1
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7.2k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
7 weeks ago by predeus ★ 2.0k
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1
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7.2k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
7 weeks ago by predeus ★ 2.0k
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0
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16k
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Comment: Comment: Issues installing bcl2fastq?
10 weeks ago by predeus ★ 2.0k
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2
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16k
views
Answer: Answer: Issues installing bcl2fastq?
10 weeks ago by predeus ★ 2.0k
0
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0
replies
664
views
Comment: Comment: API way to find "Original submitter" files in SRA?
12 weeks ago by predeus ★ 2.0k
2
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5
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664
views
API way to find "Original submitter" files in SRA?
fastq SRA
12 weeks ago by predeus ★ 2.0k
1
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0
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664
views
Answer: Answer: API way to find "Original submitter" files in SRA?
12 weeks ago by predeus ★ 2.0k
0
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1
reply
664
views
Comment: Comment: API way to find "Original submitter" files in SRA?
3 months ago by predeus ★ 2.0k
0
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0
replies
1.7k
views
Answer: Answer: Get original format information from SRA metadata
3 months ago by predeus ★ 2.0k
0
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0
replies
929
views
Comment: Comment: Samtools filtering based on PNEXT
6 months ago by predeus ★ 2.0k
0
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1
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929
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Comment: Comment: Samtools filtering based on PNEXT
6 months ago by predeus ★ 2.0k
1
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7
replies
929
views
Samtools filtering based on PNEXT
CRAM filtering samtools SAM BAM
updated 6 months ago by 100k • written 6 months ago by ★ 2.0k
0
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0
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929
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Comment: Comment: Samtools filtering based on PNEXT
6 months ago by predeus ★ 2.0k
0
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1
reply
2.5k
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Comment: Comment: Basecalling with dorado
7 months ago by predeus ★ 2.0k
0
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0
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3.1k
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Comment: Comment: Bacterial morphology details
8 months ago by predeus ★ 2.0k
3
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1
reply
754
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R package to link NCBI taxonomy ID to bacterial properties (Gram stain, aerobe/anaerobe, etc)
R NCBI bacteria taxonomy
updated 9 months ago by 8.5k • written 9 months ago by ★ 2.0k
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0
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974
views
Answer: Answer: SRA obtained metagenomic reads appears to corrupt - cannot work on SingleM
9 months ago by predeus ★ 2.0k
2
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0
replies
678
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Answer: Answer: How can I figure out where a mouse (C57BL/6J) genome is heterozygous?
9 months ago by predeus ★ 2.0k
0
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0
replies
663
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Comment: Comment: snRNA seq analysis - huge computational demand due to large number of entries
9 months ago by predeus ★ 2.0k
0
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1
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663
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Answer: Answer: snRNA seq analysis - huge computational demand due to large number of entries
9 months ago by predeus ★ 2.0k
0
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0
replies
1.6k
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Comment: Comment: Merge BAM files from (totally) different references
9 months ago by predeus ★ 2.0k
0
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0
replies
1.6k
views
Comment: Comment: Merge BAM files from (totally) different references
9 months ago by predeus ★ 2.0k
0
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1
reply
1.6k
views
Comment: Comment: Merge BAM files from (totally) different references
9 months ago by predeus ★ 2.0k
0
votes
1
reply
1.6k
views
Comment: Comment: Merge BAM files from (totally) different references
9 months ago by predeus ★ 2.0k
0
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0
replies
1.6k
views
Comment: Comment: Merge BAM files from (totally) different references
9 months ago by predeus ★ 2.0k
1
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13
replies
1.6k
views
Merge BAM files from (totally) different references
bam ngs mapping
9 months ago by predeus ★ 2.0k
0
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1
reply
1.6k
views
Comment: Comment: Merge BAM files from (totally) different references
9 months ago by predeus ★ 2.0k
0
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0
replies
436
views
Comment: Comment: Clustered bacterial RefSeq?
9 months ago by predeus ★ 2.0k
2
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2
replies
436
views
Clustered bacterial RefSeq?
refseq clustering ANI bacteria
9 months ago by predeus ★ 2.0k
0
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1
reply
726
views
Comment: Comment: bbduk.sh trimmer with multiple input files
10 months ago by predeus ★ 2.0k
1
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3
replies
726
views
bbduk.sh trimmer with multiple input files
bbduk bbmap bbtools
updated 10 months ago by 142k • written 10 months ago by ★ 2.0k
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0
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2.1k
views
Comment: Comment: Whole blood single cell RNA-seq dataset?
12 months ago by predeus ★ 2.0k
0
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0
replies
3.4k
views
Answer: Answer: HISAT2 relaxing parameters?
13 months ago by predeus ★ 2.0k
3
votes
3
replies
1.3k
views
Read counting in RSEM and Salmon (alignment mode)
quantification RSEM RNA-seq Salmon
13 months ago by predeus ★ 2.0k
2
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0
replies
1.3k
views
Answer: Answer: Read counting in RSEM and Salmon (alignment mode)
13 months ago by predeus ★ 2.0k
1
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0
replies
1.3k
views
Comment: Comment: Read counting in RSEM and Salmon (alignment mode)
13 months ago by predeus ★ 2.0k
0
votes
0
replies
371
views
Add HI:i:<n> tag to a BAM file
SAM hisat2 STAR tag BAM
14 months ago by predeus ★ 2.0k
2
votes
0
replies
840
views
Comment: Comment: To batch correct or analyse separately?
15 months ago by predeus ★ 2.0k
0
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2
replies
1.6k
views
Comment: Comment: Automated way to pull representative/RefSeq genome using full species name?
17 months ago by predeus ★ 2.0k
6
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10
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1.6k
views
Automated way to pull representative/RefSeq genome using full species name?
ncbi taxonomy refseq
updated 17 months ago by 3.9k • written 17 months ago by ★ 2.0k
0
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0
replies
714
views
Job: Senior Bioinformatician at Wellcome Sanger Institute
UK Sanger
updated 11 months ago by 43k • written 20 months ago by ★ 2.0k
0
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1
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33k
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Comment: Comment: Duplicates on Illumina
20 months ago by predeus ★ 2.0k
0
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1
reply
1.7k
views
Comment: Comment: bbduk paired-end RNA-seq trimming command
21 months ago by predeus ★ 2.0k
3
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3
replies
1.7k
views
bbduk paired-end RNA-seq trimming command
rna-seq paired-end bbduk trimming adapter
updated 21 months ago by 142k • written 21 months ago by ★ 2.0k
0
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1
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3.2k
views
Answer: Answer: SCTransform and differential gene expression
21 months ago by predeus ★ 2.0k
2
votes
0
replies
1.7k
views
Comment: Comment: Which aligner for human WGS
21 months ago by predeus ★ 2.0k
0
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0
replies
964
views
Comment: Comment: Specific case of "bedtools intersect"
2.1 years ago by predeus ★ 2.0k
2
votes
4
replies
964
views
Specific case of "bedtools intersect"
bedtools BAM
updated 11 months ago by 43k • written 2.1 years ago by ★ 2.0k
0
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1
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6.5k
views
Comment: Comment: GEO datasets-Single cell RNAseq analysis using seurat
2.1 years ago by predeus ★ 2.0k
280 results • Page 1 of 6
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