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Comment: Comment: Bulk RNA seq: all p adjusted are the same
3.4 years ago by Marco Pannone ▴ 810
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6.8k
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Comment: Comment: How to learn bioinformatics?
3.4 years ago by Marco Pannone ▴ 810
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1.7k
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Comment: Comment: GSEA not returning significant gene sets
3.4 years ago by Marco Pannone ▴ 810
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6.8k
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Answer: Answer: How to learn bioinformatics?
3.4 years ago by Marco Pannone ▴ 810
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993
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Comment: Comment: How to search and identify the function of DEGs
3.4 years ago by Marco Pannone ▴ 810
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0
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993
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Comment: Comment: How to search and identify the function of DEGs
3.4 years ago by Marco Pannone ▴ 810
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1.2k
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Comment: Comment: Merge featurecounts lists
3.4 years ago by Marco Pannone ▴ 810
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1.1k
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Comment: Comment: Comparing overrepresented sequences from fastqc.txt file
3.4 years ago by Marco Pannone ▴ 810
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1.1k
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Comment: Comment: Aggregation of bulk RNA-seq
3.4 years ago by Marco Pannone ▴ 810
1
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0
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3.8k
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Answer: Answer: determine sex ratio from the bam file
3.4 years ago by Marco Pannone ▴ 810
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0
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1.4k
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Comment: Comment: Merging a low quality run of a sample with a high quality run (RNAseq)
3.5 years ago by Marco Pannone ▴ 810
0
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1
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1.4k
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Comment: Comment: Merging a low quality run of a sample with a high quality run (RNAseq)
3.5 years ago by Marco Pannone ▴ 810
1
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1
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846
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Answer: Answer: Network visualization
3.5 years ago by Marco Pannone ▴ 810
3
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0
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639
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Comment: Comment: concatenated datasets for HISAT2 alignment
3.5 years ago by Marco Pannone ▴ 810
1
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1
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8.4k
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Comment: Comment: Error with per tile sequence quality (by FastQC)
3.5 years ago by Marco Pannone ▴ 810
0
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1
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8.4k
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Comment: Comment: Error with per tile sequence quality (by FastQC)
3.5 years ago by Marco Pannone ▴ 810
0
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1
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5.5k
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Comment: Comment: make a BED file with exons only
3.5 years ago by Marco Pannone ▴ 810
0
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1
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8.4k
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Comment: Comment: Error with per tile sequence quality (by FastQC)
3.5 years ago by Marco Pannone ▴ 810
0
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0
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1.1k
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Comment: Comment: What does it mean by local structure?
3.5 years ago by Marco Pannone ▴ 810
0
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0
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4.3k
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Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
3.5 years ago by Marco Pannone ▴ 810
1
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1
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4.3k
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Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
3.5 years ago by Marco Pannone ▴ 810
0
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0
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1.4k
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Comment: Comment: Bowtie produced empty .sam file
3.5 years ago by Marco Pannone ▴ 810
2
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1
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4.3k
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Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
3.5 years ago by Marco Pannone ▴ 810
0
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0
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1.3k
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Comment: Comment: Cytoscape network analysis
3.5 years ago by Marco Pannone ▴ 810
1
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2
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1.3k
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Cytoscape network analysis
protein-protein network interaction Cytoscape
3.5 years ago by Marco Pannone ▴ 810
0
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1
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1.5k
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Comment: Comment: featureCounts stuck
3.6 years ago by Marco Pannone ▴ 810
0
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4
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1.5k
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featureCounts stuck
featureCounts rnaseq
updated 3.6 years ago by 154k • written 3.6 years ago by ▴ 810
0
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3.3k
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Comment: Comment: Pseudocounts in RNA-seq analysis
3.6 years ago by Marco Pannone ▴ 810
1
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3
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3.3k
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Pseudocounts in RNA-seq analysis
pseudo rnaseq counts deseq2
updated 3.6 years ago by 89k • written 3.6 years ago by ▴ 810
0
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1
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2.0k
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Comment: Comment: featureCounts : GFF3 gene identifier and low percentage of assigned alignments
3.8 years ago by Marco Pannone ▴ 810
0
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0
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1.2k
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Comment: Comment: Generating multiple heatmaps with heatmap3 and lapply
3.8 years ago by Marco Pannone ▴ 810
3
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2
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1.2k
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Generating multiple heatmaps with heatmap3 and lapply
heatmap3 rstudio heatmaps lapply
3.8 years ago by Marco Pannone ▴ 810
2
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1
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3.9k
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Answer: Answer: How to merge samples of the same cell type to do differential peak calling?
3.8 years ago by Marco Pannone ▴ 810
0
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0
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1.3k
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Comment: Comment: Question regarding Enhancers
3.8 years ago by Marco Pannone ▴ 810
0
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0
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3.9k
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Comment: Comment: merging .narrowPeak files with all of the columns they have
3.9 years ago by Marco Pannone ▴ 810
0
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1
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3.9k
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Comment: Comment: merging .narrowPeak files with all of the columns they have
3.9 years ago by Marco Pannone ▴ 810
0
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1
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3.9k
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Comment: Comment: merging .narrowPeak files with all of the columns they have
3.9 years ago by Marco Pannone ▴ 810
1
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0
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1.9k
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Comment: Comment: genomecov VS bamCoverage
3.9 years ago by Marco Pannone ▴ 810
1
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1
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3.9k
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Comment: Comment: merging .narrowPeak files with all of the columns they have
3.9 years ago by Marco Pannone ▴ 810
2
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0
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1.8k
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Comment: Comment: Filtering Gene by mean expression
3.9 years ago by Marco Pannone ▴ 810
0
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0
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1.8k
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Comment: Comment: Filtering Gene by mean expression
3.9 years ago by Marco Pannone ▴ 810
1
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1
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2.4k
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Comment: Comment: HTSeq-count : is it same to use .bam file or .sam file?
3.9 years ago by Marco Pannone ▴ 810
0
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2
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2.7k
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Comment: Comment: featureCounts fragment count
3.9 years ago by Marco Pannone ▴ 810
0
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1
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4.6k
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Answer: Answer: BAM file reads mapping to multiple genes
3.9 years ago by Marco Pannone ▴ 810
0
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0
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1.8k
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Comment: Comment: Correlation Network with Cytoscape
3.9 years ago by Marco Pannone ▴ 810
6
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3
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1.7k
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Forum: Computational Biology Conference
biology computational science research conference
updated 3.9 years ago by 48k • written 3.9 years ago by ▴ 810
1
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0
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3.4k
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Comment: Comment: how to find each cluster in single-cell represent which cell type?
3.9 years ago by Marco Pannone ▴ 810
0
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0
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1.5k
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Comment: Comment: How to get DEGs compare one sample to another?
3.9 years ago by Marco Pannone ▴ 810
1
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1
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1.3k
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Answer: Answer: Gene Ontology
3.9 years ago by Marco Pannone ▴ 810
0
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0
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2.1k
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Comment: Comment: Problem extracting differentially expressed genes using diffxpy
3.9 years ago by Marco Pannone ▴ 810
194 results • Page 3 of 4
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