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2
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217
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Answer: Answer: DESeq2: Multiple disease condition vs Normal
16 days ago by Marco Pannone ▴ 290
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116
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Explore transcription data of pseudogenes
pseudogenes transcriptome databases RNA-seq
16 days ago by Marco Pannone ▴ 290
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1
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450
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Comment: Comment: Possible rRNA contamination in one sample
29 days ago by Marco Pannone ▴ 290
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1
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450
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Comment: Comment: Possible rRNA contamination in one sample
4 weeks ago by Marco Pannone ▴ 290
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1
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450
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Comment: Comment: Possible rRNA contamination in one sample
4 weeks ago by Marco Pannone ▴ 290
1
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352
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Comment: Comment: Are the top 50 features in heat map for each phenotype in dataset generated by G
5 weeks ago by Marco Pannone ▴ 290
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352
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Comment: Comment: Are the top 50 features in heat map for each phenotype in dataset generated by G
5 weeks ago by Marco Pannone ▴ 290
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255
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Comment: Comment: BED file from GSEA gene set
5 weeks ago by Marco Pannone ▴ 290
2
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1
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527
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Comment: Comment: Bulk RNA seq: all p adjusted are the same
5 weeks ago by Marco Pannone ▴ 290
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1
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435
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Comment: Comment: How to learn bioinformatics?
5 weeks ago by Marco Pannone ▴ 290
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1
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404
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Comment: Comment: GSEA not returning significant gene sets
5 weeks ago by Marco Pannone ▴ 290
4
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1
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435
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Answer: Answer: How to learn bioinformatics?
5 weeks ago by Marco Pannone ▴ 290
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223
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Comment: Comment: How to search and identify the function of DEGs
5 weeks ago by Marco Pannone ▴ 290
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0
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223
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Comment: Comment: How to search and identify the function of DEGs
5 weeks ago by Marco Pannone ▴ 290
1
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245
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Comment: Comment: Merge featurecounts lists
7 weeks ago by Marco Pannone ▴ 290
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236
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Comment: Comment: Comparing overrepresented sequences from fastqc.txt file
7 weeks ago by Marco Pannone ▴ 290
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0
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278
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Comment: Comment: Aggregation of bulk RNA-seq
7 weeks ago by Marco Pannone ▴ 290
1
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0
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367
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Answer: Answer: determine sex ratio from the bam file
8 weeks ago by Marco Pannone ▴ 290
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0
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254
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Comment: Comment: Merging a low quality run of a sample with a high quality run (RNAseq)
11 weeks ago by Marco Pannone ▴ 290
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1
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254
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Comment: Comment: Merging a low quality run of a sample with a high quality run (RNAseq)
11 weeks ago by Marco Pannone ▴ 290
1
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1
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198
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Answer: Answer: Network visualization
12 weeks ago by Marco Pannone ▴ 290
3
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0
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168
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Comment: Comment: concatenated datasets for HISAT2 alignment
12 weeks ago by Marco Pannone ▴ 290
1
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1
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592
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Comment: Comment: Error with per tile sequence quality (by FastQC)
12 weeks ago by Marco Pannone ▴ 290
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1
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592
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Comment: Comment: Error with per tile sequence quality (by FastQC)
12 weeks ago by Marco Pannone ▴ 290
0
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1
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454
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Comment: Comment: make a BED file with exons only
12 weeks ago by Marco Pannone ▴ 290
0
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1
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592
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Comment: Comment: Error with per tile sequence quality (by FastQC)
12 weeks ago by Marco Pannone ▴ 290
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0
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193
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Comment: Comment: What does it mean by local structure?
12 weeks ago by Marco Pannone ▴ 290
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0
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583
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Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
12 weeks ago by Marco Pannone ▴ 290
1
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1
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583
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Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
12 weeks ago by Marco Pannone ▴ 290
0
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0
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263
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Comment: Comment: Bowtie produced empty .sam file
3 months ago by Marco Pannone ▴ 290
1
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1
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583
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Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
3 months ago by Marco Pannone ▴ 290
0
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0
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252
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Comment: Comment: Cytoscape network analysis
3 months ago by Marco Pannone ▴ 290
1
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2
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252
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Cytoscape network analysis
protein-protein network interaction Cytoscape
3 months ago by Marco Pannone ▴ 290
0
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1
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388
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Comment: Comment: featureCounts stuck
3 months ago by Marco Pannone ▴ 290
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4
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388
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featureCounts stuck
featureCounts rnaseq
updated 3 months ago by 117k • written 3 months ago by ▴ 290
0
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1
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409
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Comment: Comment: Pseudocounts in RNA-seq analysis
4 months ago by Marco Pannone ▴ 290
1
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3
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409
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Pseudocounts in RNA-seq analysis
pseudo rnaseq counts deseq2
updated 4 months ago by 62k • written 4 months ago by ▴ 290
0
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504
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Comment: Comment: featureCounts : GFF3 gene identifier and low percentage of assigned alignments
6 months ago by Marco Pannone ▴ 290
0
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0
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319
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Comment: Comment: Generating multiple heatmaps with heatmap3 and lapply
6 months ago by Marco Pannone ▴ 290
3
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2
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319
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Generating multiple heatmaps with heatmap3 and lapply
heatmap3 rstudio heatmaps lapply
6 months ago by Marco Pannone ▴ 290
1
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1
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893
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Answer: Answer: How to merge samples of the same cell type to do differential peak calling?
7 months ago by Marco Pannone ▴ 290
0
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0
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422
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Comment: Comment: Question regarding Enhancers
7 months ago by Marco Pannone ▴ 290
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0
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844
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Comment: Comment: merging .narrowPeak files with all of the columns they have
7 months ago by Marco Pannone ▴ 290
0
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1
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844
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Comment: Comment: merging .narrowPeak files with all of the columns they have
7 months ago by Marco Pannone ▴ 290
0
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1
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844
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Comment: Comment: merging .narrowPeak files with all of the columns they have
7 months ago by Marco Pannone ▴ 290
0
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0
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418
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Comment: Comment: genomecov VS bamCoverage
7 months ago by Marco Pannone ▴ 290
1
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1
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844
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Comment: Comment: merging .narrowPeak files with all of the columns they have
7 months ago by Marco Pannone ▴ 290
2
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0
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542
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Comment: Comment: Filtering Gene by mean expression
7 months ago by Marco Pannone ▴ 290
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0
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542
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Comment: Comment: Filtering Gene by mean expression
7 months ago by Marco Pannone ▴ 290
1
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745
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Comment: Comment: HTSeq-count : is it same to use .bam file or .sam file?
7 months ago by Marco Pannone ▴ 290
102 results • Page 1 of 3
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