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Comment:
Comment: Bowtie2 Alignment with low percentage of properly paired reads (ATAC-seq)
18 months ago by
Marco Pannone
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1.2k
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Comment:
Comment: Exon counts do not match gene and transcript counts
18 months ago by
Marco Pannone
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1
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1.3k
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Comment:
Comment: How to perform paired t-test in R for obtaining p-value of each gene?
19 months ago by
Marco Pannone
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2
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1.1k
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Comment:
Comment: ChIPQC error <<Unable to process. Each bam file must be associated with at most
19 months ago by
Marco Pannone
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1.1k
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Comment:
Comment: ChIPQC error <<Unable to process. Each bam file must be associated with at most
19 months ago by
Marco Pannone
▴ 790
1
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0
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704
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Comment:
Comment: Bowtie 2 error- bowtie2-align died with signal 6 (ABRT): Help please!
19 months ago by
Marco Pannone
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0
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665
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Comment:
Comment: quality control chip-seq
19 months ago by
Marco Pannone
▴ 790
1
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1
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676
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Comment:
Comment: To order list of genes
19 months ago by
Marco Pannone
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0
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2.1k
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Comment:
Comment: Pathway Score measurement in R
19 months ago by
Marco Pannone
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1
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0
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583
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Comment:
Comment: DESeq2. Multi-factor Interactions designs
19 months ago by
Marco Pannone
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0
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0
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1.4k
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Comment:
Comment: Convert Gene Ensemble IDs to Gene Symbols on R
19 months ago by
Marco Pannone
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1
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2
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1.4k
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Comment:
Comment: Convert Gene Ensemble IDs to Gene Symbols on R
19 months ago by
Marco Pannone
▴ 790
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1.4k
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Comment:
Comment: Convert Gene Ensemble IDs to Gene Symbols on R
19 months ago by
Marco Pannone
▴ 790
1
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1
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1.4k
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Answer:
Answer: Convert Gene Ensemble IDs to Gene Symbols on R
19 months ago by
Marco Pannone
▴ 790
1
vote
2
replies
726
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Answer:
Answer: How to add line breaks before each ">" header line in fasta file
19 months ago by
Marco Pannone
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0
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855
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Comment:
Comment: Change of -t argument in featureCounts affecting annotation
19 months ago by
Marco Pannone
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1
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855
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Comment:
Comment: Change of -t argument in featureCounts affecting annotation
19 months ago by
Marco Pannone
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3
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4
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855
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Change of -t argument in featureCounts affecting annotation
rnaseq
subread
annotation
featureCounts
19 months ago by
Marco Pannone
▴ 790
0
votes
0
replies
750
views
Comment:
Comment: Deeptools comparing heatmap zMin and zMax across different plotHeatmaps
19 months ago by
Marco Pannone
▴ 790
0
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1
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750
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Comment:
Comment: Deeptools comparing heatmap zMin and zMax across different plotHeatmaps
19 months ago by
Marco Pannone
▴ 790
0
votes
0
replies
4.4k
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Comment:
Comment: Unable to install bioconda and bowtie
19 months ago by
Marco Pannone
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0
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1.7k
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Comment:
Comment: How to convert Ensemble Gene IDs to gene symbols or Entrez Gene IDs?
19 months ago by
Marco Pannone
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1
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4.4k
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Comment:
Comment: Unable to install bioconda and bowtie
19 months ago by
Marco Pannone
▴ 790
0
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1
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4.4k
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Comment:
Comment: Unable to install bioconda and bowtie
19 months ago by
Marco Pannone
▴ 790
0
votes
0
replies
640
views
Comment:
Comment: calling peaks in ChIP-seq datasets from bedgraph files
19 months ago by
Marco Pannone
▴ 790
0
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0
replies
716
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Comment:
Comment: macs callpeak q value cutoff 1 and 0.05 with different peak result
19 months ago by
Marco Pannone
▴ 790
0
votes
1
reply
809
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Comment:
Comment: trimmomatic
20 months ago by
Marco Pannone
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1
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1
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885
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Answer:
Answer: How can I filter genes >10 reads in at least 2 replicates
21 months ago by
Marco Pannone
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0
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0
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648
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Comment:
Comment: Genome indexing
21 months ago by
Marco Pannone
▴ 790
0
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1
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648
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Comment:
Comment: Genome indexing
21 months ago by
Marco Pannone
▴ 790
5
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1
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755
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Answer:
Answer: How to extract the read counts after normalization with DESeq in R?
21 months ago by
Marco Pannone
▴ 790
2
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0
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449
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Answer:
Answer: Rare chromosomes list in VCF file
21 months ago by
Marco Pannone
▴ 790
0
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0
replies
1.1k
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Comment:
Comment: PlotHeatmap in deeptools horizontally
21 months ago by
Marco Pannone
▴ 790
0
votes
1
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1.1k
views
Comment:
Comment: PlotHeatmap in deeptools horizontally
21 months ago by
Marco Pannone
▴ 790
1
vote
1
reply
1.0k
views
Comment:
Comment: Increased GC content after trimming RNAseq data
21 months ago by
Marco Pannone
▴ 790
2
votes
1
reply
1.1k
views
Comment:
Comment: PlotHeatmap in deeptools horizontally
21 months ago by
Marco Pannone
▴ 790
1
vote
1
reply
1.9k
views
Answer:
Answer: gene set enrichment analysis
21 months ago by
Marco Pannone
▴ 790
0
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0
replies
3.4k
views
Comment:
Comment: Cut&Run vs ChIP-seq pipeline
21 months ago by
Marco Pannone
▴ 790
0
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1
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3.4k
views
Comment:
Comment: Cut&Run vs ChIP-seq pipeline
21 months ago by
Marco Pannone
▴ 790
4
votes
5
replies
3.4k
views
Cut&Run vs ChIP-seq pipeline
chip-seq
cut-run
updated 21 months ago by
rpolicastro
13k • written 21 months ago by
Marco Pannone
▴ 790
2
votes
1
reply
777
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Comment:
Comment: Error in DiffBind
21 months ago by
Marco Pannone
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0
replies
1.4k
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Comment:
Comment: How to do GO enrichment analysis for Klebsiella pneumonia?
22 months ago by
Marco Pannone
▴ 790
2
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1
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759
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Answer:
Answer: DESeq2: Multiple disease condition vs Normal
22 months ago by
Marco Pannone
▴ 790
0
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0
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334
views
Explore transcription data of pseudogenes
pseudogenes
transcriptome
databases
RNA-seq
22 months ago by
Marco Pannone
▴ 790
0
votes
1
reply
1.1k
views
Comment:
Comment: Possible rRNA contamination in one sample
23 months ago by
Marco Pannone
▴ 790
0
votes
1
reply
1.1k
views
Comment:
Comment: Possible rRNA contamination in one sample
23 months ago by
Marco Pannone
▴ 790
0
votes
1
reply
1.1k
views
Comment:
Comment: Possible rRNA contamination in one sample
23 months ago by
Marco Pannone
▴ 790
1
vote
1
reply
1.1k
views
Comment:
Comment: Are the top 50 features in heat map for each phenotype in dataset generated by G
23 months ago by
Marco Pannone
▴ 790
0
votes
1
reply
1.1k
views
Comment:
Comment: Are the top 50 features in heat map for each phenotype in dataset generated by G
23 months ago by
Marco Pannone
▴ 790
0
votes
0
replies
706
views
Comment:
Comment: BED file from GSEA gene set
23 months ago by
Marco Pannone
▴ 790
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