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3
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4
replies
2.3k
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How to extract calculated RSA values from dssp and its corresponding residue?
pdb dssp RSA biopython commandline
4.4 years ago by tpm ▴ 30
0
votes
0
replies
738
views
How can I use DAVID Database on comparing proteomic IDs from wild type and knockout strains on upregulated and downregulated protein levels?
DAVIDdatabase protein_networks
updated 4.8 years ago by 20 • written 5.0 years ago by ▴ 30
1
vote
2
replies
1.5k
views
compareCluster error: On clusterProfiler DEGs enrichments analysis
clusterProfiler Bioconductor R DEGs
4.9 years ago by tpm ▴ 30
2
votes
5
replies
1.1k
views
How to pull logFC values for a select ENTREZID from a gene-list on R?
bioconductor R DEP
4.9 years ago by tpm ▴ 30
2
votes
2
replies
706
views
How to convert these IDs with slash (/) sign to a list?
gene
updated 21 months ago by 45k • written 4.9 years ago by ▴ 30
0
votes
6
replies
2.4k
views
How to simultaneously convert gene IDs to Kegg IDs for E. coli
geneID kegg bioconductor
updated 4.9 years ago by 89k • written 4.9 years ago by ▴ 30
0
votes
1
reply
1.1k
views
compareProfiler - Assistance on how I can modify codes for different states
clusterProfiler bioconductor assembly R
4.9 years ago by tpm ▴ 30
4
votes
6
replies
2.3k
views
What codes do I use to generate gene cluster vectors with entrez gene id on clusterProfiler.
clusterProfiler enrichGO DEP R BIOCONDUCTOR
updated 4.0 years ago by 89k • written 4.9 years ago by ▴ 30
2
votes
4
replies
1.3k
views
I have differentially expressed protein IDs that were scored between Wild-type E coli and E coli (with knockout gene). How can I generate a plot to s…
GeneOntology GO GOSlim Proteins
4.9 years ago by tpm ▴ 30
1
vote
9
replies
10.0k
views
How to run protein-protein interaction on R using STRING database
stringdb
updated 4.9 years ago by ▴ 20 • written 5.0 years ago by ▴ 30
0
votes
3
replies
1.1k
views
Which bioinformatic tool can I use to assess overlapping genes between 2 datasets
bioimformatictools toolbox proteins
5.0 years ago by tpm ▴ 30
0
votes
7
replies
1.1k
views
Is it possible to convert several protein ID in to Fasta format?
sequence fasta
5.0 years ago by tpm ▴ 30
3
votes
3
replies
2.1k
views
How to run protein-protein interaction on R using STRING database
R stringdb
updated 5.0 years ago by 27k • written 5.0 years ago by ▴ 30
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