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RNA-seq differential expression analysis at specific defined intervals (downstream 1kb adjacent region to repetitive elements)
RNA-seq
2.8 years ago by
jennxyzhang
• 0
4
votes
8
replies
2.4k
views
No space left on device error with deeptools bamCompare
software error
deeptools
picard
bash
terminal
updated 3.2 years ago by
Kevin Blighe
87k • written 3.8 years ago by
jennxyzhang
• 0
0
votes
1
reply
1.1k
views
ChIP-seq Differential Binding analysis for specified genomic regions of interest? (DiffBind/csaw?)
ChIP-Seq
DiffBind
csaw
differential binding
R
updated 3.7 years ago by
ATpoint
82k • written 3.7 years ago by
jennxyzhang
• 0
0
votes
3
replies
3.1k
views
deeptools computeMatrix reference-point, want to plot 1kb before TSS and 1kb after TES then use plotHeatmap
ChIP-Seq
deeptools
software error
updated 3.7 years ago by
Biostar
20 • written 3.8 years ago by
jennxyzhang
• 0
0
votes
2
replies
1.2k
views
igvtools count | wigToBigWig, pipe not working for some reason although stdout and stdin should work with both commands?
ChIP-Seq
software error
updated 3.8 years ago by
Pierre Lindenbaum
161k • written 3.8 years ago by
jennxyzhang
• 0
2
votes
1
reply
588
views
Downloaded fastq from SRA, am I right in thinking it isn't interleaved paired-end reads?
sequencing
updated 3.9 years ago by
GenoMax
142k • written 3.9 years ago by
jennxyzhang
• 0
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