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4
votes
3
replies
4.3k
views
De Novo Assembly Using 'A5' Pipeline
illumina miseq
updated 3.6 years ago by 43k • written 11.1 years ago by ▴ 590
12
votes
8
replies
10k
views
How to make a custom blast db with taxon IDs from a taxid_map file
blast makeblastdb taxid_map
updated 4.3 years ago by ▴ 50 • written 7.8 years ago by ▴ 590
1
vote
0
replies
2.8k
views
Answer: A: Program for searching for a specific partition within a set of phylogenetic tree
updated 4.4 years ago by 43k • written 10.0 years ago by ▴ 590
0
votes
0
replies
10k
views
Answer: A: How to make a custom blast db with taxon IDs from a taxid_map file
7.8 years ago by rwn ▴ 590
0
votes
0
replies
10k
views
Comment: C: How to make a custom blast db with taxon IDs from a taxid_map file
7.8 years ago by rwn ▴ 590
0
votes
3
replies
3.7k
views
Parsing HMMER output with BioPerl
HMMER Bioperl
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
11
votes
7
replies
7.4k
views
Bioperl Get Gene Id From Protein Accession Using Eutilities
bioperl ncbi
9.4 years ago by rwn ▴ 590
1
vote
1
reply
18k
views
Comment: Comment: BLAST definition and difference between 'qcovs' and 'qcovhsp'
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 590
22
votes
4
replies
18k
views
BLAST definition and difference between 'qcovs' and 'qcovhsp'
blast qcovs qcovhsp query coverage
updated 19 months ago by • 0 • written 9.4 years ago by ▴ 590
1
vote
1
reply
8.0k
views
Comment: Comment: How to retrieve gene sequences and their products from NCBI's FTP?
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
0
votes
1
reply
8.0k
views
Comment: Comment: How to retrieve gene sequences and their products from NCBI's FTP?
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
1
vote
1
reply
8.0k
views
Comment: Comment: How to retrieve gene sequences and their products from NCBI's FTP?
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
0
votes
1
reply
8.0k
views
Comment: Comment: How to retrieve gene sequences and their products from NCBI's FTP?
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
4
votes
1
reply
8.0k
views
Answer: Answer: How to retrieve gene sequences and their products from NCBI's FTP?
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
1
vote
1
reply
8.0k
views
Comment: Comment: How to retrieve gene sequences and their products from NCBI's FTP?
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
1
vote
1
reply
8.0k
views
Comment: Comment: How to retrieve gene sequences and their products from NCBI's FTP?
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
0
votes
1
reply
8.0k
views
Comment: Comment: How to retrieve gene sequences and their products from NCBI's FTP?
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
1
vote
2
replies
8.0k
views
Comment: C: How to retrieve gene sequences and their products from NCBI's FTP?
9.6 years ago by rwn ▴ 590
0
votes
1
reply
8.0k
views
Answer: A: How to retrieve gene sequences and their products from NCBI's FTP?
9.6 years ago by rwn ▴ 590
0
votes
0
replies
3.6k
views
Comment: Comment: GO gene enrichment test in non model organism (bacteria)
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
1
vote
2
replies
3.6k
views
GO gene enrichment test in non model organism (bacteria)
enrichment GO blast2go gene-ontology goeast
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
1
vote
0
replies
12k
views
Answer: Answer: how to convert a NEXUS treefile to a Newick ultrametric treefile
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
0
votes
1
reply
9.5k
views
Comment: C: remove fasta file heading
9.6 years ago by rwn ▴ 590
1
vote
0
replies
8.9k
views
Comment: Comment: What OrthoMCL input file and output looks like?
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
2
votes
1
reply
5.5k
views
Answer: Answer: NCBI GeneID vs ProteinID database
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
1
vote
1
reply
2.3k
views
Comment: Comment: Gene Function through sequence homology
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
5
votes
0
replies
8.9k
views
Answer: A: What OrthoMCL input file and output looks like?
9.6 years ago by rwn ▴ 590
0
votes
0
replies
3.7k
views
Comment: Comment: Parsing HMMER output with BioPerl
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 590
0
votes
0
replies
12k
views
Comment: C: Pros and Cons of HMMER versus BLAST
9.7 years ago by rwn ▴ 590
11
votes
3
replies
12k
views
Pros and Cons of HMMER versus BLAST
hmmer homology BLAST hidden-Markov-models
updated 2.4 years ago by 43k • written 9.7 years ago by ▴ 590
1
vote
0
replies
7.4k
views
Comment: C: Total length covered by BAM alignment (or BED file)
9.8 years ago by rwn ▴ 590
0
votes
1
reply
7.4k
views
Comment: C: Total length covered by BAM alignment (or BED file)
9.8 years ago by rwn ▴ 590
0
votes
0
replies
7.4k
views
Comment: C: Total length covered by BAM alignment (or BED file)
9.8 years ago by rwn ▴ 590
11
votes
10
replies
7.4k
views
Total length covered by BAM alignment (or BED file)
Perl Bed Bam
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 590
0
votes
1
reply
7.4k
views
Comment: Comment: Total length covered by BAM alignment (or BED file)
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 590
0
votes
0
replies
4.0k
views
Comment: C: VCF filtering with a maximum coverage threshold
9.8 years ago by rwn ▴ 590
2
votes
2
replies
4.0k
views
VCF filtering with a maximum coverage threshold
VCF freebayes SNPs vcffilter bacteria
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 590
5
votes
4
replies
2.8k
views
Program for searching for a specific partition within a set of phylogenetic trees
phylogenetics
10.0 years ago by rwn ▴ 590
0
votes
1
reply
2.8k
views
Comment: C: Program for searching for a specific partition within a set of phylogenetic tree
10.0 years ago by rwn ▴ 590
3
votes
1
reply
3.4k
views
Strange Behaviour Of Bioperl'S Bio::Searchio When Parsing Xml Blast Output
blast perl bioperl xml
10.4 years ago by rwn ▴ 590
3
votes
0
replies
3.4k
views
Answer: A: Strange Behaviour Of Bioperl'S Bio::Searchio When Parsing Xml Blast Output
10.4 years ago by rwn ▴ 590
2
votes
1
reply
2.9k
views
How To Set -Max_Coverage In Velvetg
velvet genomics
updated 10.6 years ago by ▴ 980 • written 11.1 years ago by ▴ 590
2
votes
0
replies
4.3k
views
Comment: C: De Novo Assembly Using 'A5' Pipeline
11.1 years ago by rwn ▴ 590
2
votes
1
reply
7.4k
views
Answer: A: Bioperl Get Gene Id From Protein Accession Using Eutilities
11.2 years ago by rwn ▴ 590
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