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Answer: Answer: How to extract rows with specific values in R for all the columns?
updated 6 weeks ago by 43k • written 6 weeks ago by 13k
2
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1
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376
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Answer: Answer: How do I collapse rows of a tibble in R?
10 weeks ago by rpolicastro 13k
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2
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347
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Answer: Answer: pseudobulk differential expression design matrix
12 weeks ago by rpolicastro 13k
1
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0
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296
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Answer: Answer: is there a tool to recover corrupted fastq files
12 weeks ago by rpolicastro 13k
0
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0
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271
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Answer: Answer: Extracting observations from one dataframe to populate another
updated 3 months ago by 43k • written 3 months ago by 13k
10
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2
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588
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Answer: Answer: Lollipop plot for genome-view genes and differential expressing visuallization
3 months ago by rpolicastro 13k
2
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1
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450
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Answer: Answer: How to create a metagene profile plot
4 months ago by rpolicastro 13k
1
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0
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261
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Answer: Answer: how arrange samples columns according to row names from another file in R
4 months ago by rpolicastro 13k
1
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0
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777
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Answer: Answer: where to work as a bioinformatician (NGS/IA)
4 months ago by rpolicastro 13k
3
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552
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Answer: Answer: Doublechecking enrichment of promoters of DE genes
4 months ago by rpolicastro 13k
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0
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3.3k
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Answer: Answer: I’m considering a career transition from software engineering to bioinformatics.
4 months ago by rpolicastro 13k
0
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0
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774
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Answer: Answer: How to put spaces between bars in ggplot2 barplot
5 months ago by rpolicastro 13k
3
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1
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852
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Answer: Answer: Search a read by its name in a big fastq.gz file
5 months ago by rpolicastro 13k
1
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1
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413
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Answer: Answer: recommend gene ranking methods when doing GSEA
5 months ago by rpolicastro 13k
3
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1
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638
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Answer: Answer: how to calculate duplicated reads in single cell RNA 10x genomics data
5 months ago by rpolicastro 13k
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562
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Answer: Answer: Making multiple box plots with relative abundance in R
5 months ago by rpolicastro 13k
2
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528
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Answer: Answer: How to create a mutation frequency comparison plot?
5 months ago by rpolicastro 13k
2
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0
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505
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Answer: Answer: How to get unaligned reads and aligned reads into separate files from SAM/BAM?
5 months ago by rpolicastro 13k
0
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1
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638
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Answer: Answer: featureCount Error "No paired-end reads were detected in paired-end read library
6 months ago by rpolicastro 13k
2
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1
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824
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Answer: Answer: Samtools index not working in Snakemake
6 months ago by rpolicastro 13k
3
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1
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810
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Answer: Answer: running for loop for resolution of seurat got error: Error: Not an S4 object.
6 months ago by rpolicastro 13k
1
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0
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897
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Answer: Answer: Create Seurat Object from matrix and two text files
6 months ago by rpolicastro 13k
2
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1
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671
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Answer: Answer: all(rownames(cts) %in% txdf$TXNAME) is FALSE in DTU Analysis in R
6 months ago by rpolicastro 13k
2
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1
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604
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Answer: Answer: HT-Seq and count matrix
6 months ago by rpolicastro 13k
2
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0
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598
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Answer: Answer: Printing quality scores from fastq file
6 months ago by rpolicastro 13k
3
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2
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825
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Answer: Answer: GSVA Analysis
6 months ago by rpolicastro 13k
0
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0
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430
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Answer: Answer: QC cut off for snRNAseq data
7 months ago by rpolicastro 13k
4
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837
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Answer: Answer: Unable to install Kmergenie
7 months ago by rpolicastro 13k
1
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1
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626
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Answer: Answer: What is the best integration package for large single cell RNA sequencing datase
11 months ago by rpolicastro 13k
1
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0
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878
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Answer: Answer: Rename GFF3 File
11 months ago by rpolicastro 13k
2
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0
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492
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Answer: Answer: Is RNA-Seq well suited for studying pseudogenes and lncRNA?
11 months ago by rpolicastro 13k
2
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1
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2.5k
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Answer: Answer: How to calculate TPM from featureCounts output
11 months ago by rpolicastro 13k
0
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0
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1.2k
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Answer: Answer: what is the difference between FindVariableFeatures and FindAllMarkers?
11 months ago by rpolicastro 13k
6
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0
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1.2k
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Answer: Answer: how to sort a fasta file
11 months ago by rpolicastro 13k
1
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0
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701
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Answer: Answer: sctransform on scRNA seq
11 months ago by rpolicastro 13k
1
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1
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1.3k
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Answer: Answer: Dot Plot using KEGG
11 months ago by rpolicastro 13k
1
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1
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681
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Answer: Answer: Concatenating text files based on common indices
11 months ago by rpolicastro 13k
2
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2
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2.7k
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Answer: Answer: INSTALLING DEseq2 via conda
12 months ago by rpolicastro 13k
1
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1
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737
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Answer: Answer: Removing four columns with the same name and position from 38 data.frames in R
12 months ago by rpolicastro 13k
2
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0
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433
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Answer: Answer: emptyDrops generates different results
12 months ago by rpolicastro 13k
1
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0
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589
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Answer: Answer: What is the best aligner for stranded RNASeq
12 months ago by rpolicastro 13k
3
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1
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858
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Answer: Answer: Problematic experimental design RNA-Seq
12 months ago by rpolicastro 13k
1
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1
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2.4k
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Answer: Answer: Error in `dplyr::mutate()`
12 months ago by rpolicastro 13k
3
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1
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753
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Answer: Answer: p-fold plot
12 months ago by rpolicastro 13k
0
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1
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743
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Answer: Answer: scRNA seq integration
12 months ago by rpolicastro 13k
0
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1
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633
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Answer: Answer: scRNA-seq cell type mapping neuron VS glia proportion
12 months ago by rpolicastro 13k
2
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0
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649
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Answer: Answer: Changing a fasta header
12 months ago by rpolicastro 13k
0
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0
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582
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Answer: Answer: Count Matrix normalisation for downstream analysis and for creating heatmap of t
12 months ago by rpolicastro 13k
0
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0
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698
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Answer: Answer: Cigar String really high N
12 months ago by rpolicastro 13k
3
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1
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1.1k
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Answer: Answer: Combining data from single- and paired-end sequencing done on same samples
12 months ago by rpolicastro 13k
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