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Comment: Comment: How can I compare the similarities of two transcriptomes?
4.3 years ago by Pratik ★ 1.1k
0
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0
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1.3k
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Comment: Comment: Cannot great a gene by gene matrix in Rstudio
4.3 years ago by Pratik ★ 1.1k
1
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1
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1.3k
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Answer: Answer: Cannot great a gene by gene matrix in Rstudio
4.3 years ago by Pratik ★ 1.1k
1
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1
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5.4k
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Answer: Answer: GTF file how do I search for duplicates of Gene ID and print them out
4.3 years ago by Pratik ★ 1.1k
0
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1
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3.0k
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Comment: Comment: extracting ensembl gene id or entrez gene id from a gene annotation file for BIN
4.3 years ago by Pratik ★ 1.1k
0
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2
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5.4k
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Comment: Comment: GTF file how do I search for duplicates of Gene ID and print them out
4.3 years ago by Pratik ★ 1.1k
1
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2
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3.0k
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Comment: Comment: extracting ensemble gene id or entrez gene id from a gene annotation file for B
4.3 years ago by Pratik ★ 1.1k
1
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0
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1.7k
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Tutorial: How to: make Camellia sinensis var. sinensis (black tea) custom annotation files for BINGO Cytoscape
bingo cytoscape
4.3 years ago by Pratik ★ 1.1k
0
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0
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3.9k
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Comment: Comment: How do I make a ComplexHeatmap from this dataframe?
4.3 years ago by Pratik ★ 1.1k
10
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10
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3.9k
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6 follow
How do I make a ComplexHeatmap from this dataframe?
scaling scale heatmap
4.3 years ago by Pratik ★ 1.1k
1
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0
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3.9k
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Comment: Comment: How do I make a ComplexHeatmap from this dataframe?
4.3 years ago by Pratik ★ 1.1k
0
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0
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3.9k
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Comment: Comment: How do I make a ComplexHeatmap from this dataframe?
4.3 years ago by Pratik ★ 1.1k
0
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1
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3.9k
views
Comment: Comment: How do I make a ComplexHeatmap from this dataframe?
4.3 years ago by Pratik ★ 1.1k
0
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0
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3.9k
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Comment: Comment: How do I make a ComplexHeatmap from this dataframe?
4.3 years ago by Pratik ★ 1.1k
1
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1
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3.0k
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Answer: Answer: extracting ensemble gene id or entrez gene id from a gene annotation file for B
4.3 years ago by Pratik ★ 1.1k
0
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1
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3.2k
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Answer: Answer: Spatial transcriptomics data
4.3 years ago by Pratik ★ 1.1k
2
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0
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22k
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Answer: Answer: How to convert bulk UniProt Id to GO terms/Ids?
4.3 years ago by Pratik ★ 1.1k
1
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1
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11k
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Answer: Answer: Seurat to Dataframe with ONLY counts, cells, and cluster labels?
4.3 years ago by Pratik ★ 1.1k
7
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7
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9.4k
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How to fix missing values error message after SCTransform (Seurat)?
Seurat R SCTransform
4.3 years ago by Pratik ★ 1.1k
2
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0
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9.4k
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Answer: Answer: How to fix missing values error message after SCTransform (Seurat)?
4.3 years ago by Pratik ★ 1.1k
0
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0
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9.4k
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Comment: Comment: How to fix missing values error message after SCTransform (Seurat)?
4.3 years ago by Pratik ★ 1.1k
0
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1
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9.4k
views
Comment: Comment: How to fix missing values error message after SCTransform (Seurat)?
4.3 years ago by Pratik ★ 1.1k
0
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1
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9.4k
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Comment: Comment: How to fix missing values error message after SCTransform (Seurat)?
4.3 years ago by Pratik ★ 1.1k
0
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0
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3.5k
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Comment: Comment: How to interpret ScanPy scatter plots for QC filtering?
4.3 years ago by Pratik ★ 1.1k
4
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4
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3.5k
views
How to interpret ScanPy scatter plots for QC filtering?
Python jupyter-lab ScanPy RNA-Seq scRNA-seq
4.3 years ago by Pratik ★ 1.1k
0
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0
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3.5k
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Comment: Comment: How to interpret ScanPy scatter plots for QC filtering?
4.3 years ago by Pratik ★ 1.1k
1
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1
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1.4k
views
Answer: A: Single-cell RNAseq for glia
4.5 years ago by Pratik ★ 1.1k
0
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0
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628
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Database for signalling pathway agonists and antagonists?
database gene
4.6 years ago by Pratik ★ 1.1k
3
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2
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9.1k
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Answer: A: How to transform the deg gene list from seurat to a gene list input to clusterPr
4.6 years ago by Pratik ★ 1.1k
0
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1
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4.6k
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Comment: C: How do I use FindAllMarkers after making additional cluster assignments?
4.6 years ago by Pratik ★ 1.1k
2
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1
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4.6k
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Answer: A: How do I use FindAllMarkers after making additional cluster assignments?
4.6 years ago by Pratik ★ 1.1k
4
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4
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4.6k
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How do I use FindAllMarkers after making additional cluster assignments?
Seurat R single cell-RNA seq scRNA-seq
4.6 years ago by Pratik ★ 1.1k
5
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1
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20k
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Answer: A: How to use FindSubCluster in Seurat?
4.6 years ago by Pratik ★ 1.1k
0
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0
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20k
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Comment: C: How to use FindSubCluster in Seurat?
4.6 years ago by Pratik ★ 1.1k
3
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1
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1.6k
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Answer: A: What Phenotype databases do you recommend for searching genes related to disease
4.6 years ago by Pratik ★ 1.1k
0
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1
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1.4k
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Comment: C: Number of upregulated and downregulated genes from counts matrix
4.6 years ago by Pratik ★ 1.1k
1
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1
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2.6k
views
How to interpret highly variable genes plot in Scanpy?
python single-cell RNA Seq
updated 2.6 years ago by • 0 • written 4.6 years ago by ★ 1.1k
3
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0
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4.3k
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Answer: A: How to deal with single nucleus data in Seurat
4.6 years ago by Pratik ★ 1.1k
0
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0
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2.2k
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Comment: C: How to record Seurat DE analysis efficiently?
4.6 years ago by Pratik ★ 1.1k
0
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1
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2.2k
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Comment: C: How to record Seurat DE analysis efficiently?
4.6 years ago by Pratik ★ 1.1k
1
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0
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2.2k
views
Answer: A: How to record Seurat DE analysis efficiently?
4.6 years ago by Pratik ★ 1.1k
6
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7
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2.2k
views
How to record Seurat DE analysis efficiently?
R RNA-Seq rna-seq
4.6 years ago by Pratik ★ 1.1k
0
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0
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2.2k
views
Comment: C: How to record Seurat DE analysis efficiently?
4.6 years ago by Pratik ★ 1.1k
2
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3
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1.9k
views
What is the difference between a heatmap-dendrogram of a gene-gene correlation matrix made from one cluster versus multiple clusters?
scRNA-Seq Seurat RNA-Seq R rna-seq
4.8 years ago by Pratik ★ 1.1k
0
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1
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1.9k
views
Comment: C: What is the difference between a heatmap-dendrogram of a gene-gene correlation m
4.8 years ago by Pratik ★ 1.1k
3
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0
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2.7k
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Answer: A: Is there a way to use multiple processors (parallelize) to create a heatmap for
4.8 years ago by Pratik ★ 1.1k
9
votes
9
replies
2.7k
views
Is there a way to use multiple processors (parallelize) to create a heatmap for a large dataset?
parallel processing heatmap scRNA-seq
4.8 years ago by Pratik ★ 1.1k
0
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0
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12k
views
Comment: C: How do I subset a Seurat object using variable features?
4.8 years ago by Pratik ★ 1.1k
3
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2
replies
12k
views
How do I subset a Seurat object using variable features?
seurat RNA-Seq scRNA-seq R
updated 4.8 years ago by ▴ 840 • written 4.8 years ago by ★ 1.1k
1
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0
replies
2.7k
views
Comment: C: Is there a way to use multiple processors (parallelize) to create a heatmap for
4.8 years ago by Pratik ★ 1.1k
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