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1.1k
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Answer: Answer: Scanpy Dotplot / Matplotlib Help
3 months ago by Pratik ★ 1.1k
4
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2
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649
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Help regarding quality control of 10X run?
10x nuclei qc scnuc
updated 3 months ago by ★ 19k • written 3 months ago by ★ 1.1k
0
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0
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630
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Comment: Comment: Demultiplexing samples when barcodes repeat: Any advice?
6 months ago by Pratik ★ 1.1k
1
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0
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1.1k
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Answer: Answer: adding gene and CDS feature types in ensemble gtf annotation with transcript and
19 months ago by Pratik ★ 1.1k
0
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0
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1.6k
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Answer: Answer: How to do DE between cells expressing specific gene in scanpy?
19 months ago by Pratik ★ 1.1k
1
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1
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1.2k
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Answer: Answer: Get the gene functions specific for clusters (RNA seq)
21 months ago by Pratik ★ 1.1k
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0
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1.2k
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Comment: Comment: Should centering and scaling be done on methylation beta values for principal co
21 months ago by Pratik ★ 1.1k
1
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2
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1.2k
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Should centering and scaling be done on methylation beta values for principal component analysis (PCA)?
PCA PCAtools
21 months ago by Pratik ★ 1.1k
0
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0
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1.1k
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Comment: Comment: Is it possible to bulk-download gene expression + methylation data for a specifi
21 months ago by Pratik ★ 1.1k
4
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3
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1.1k
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Is it possible to bulk-download gene expression + methylation data for a specific copy number loss on TCGA?
tcga
updated 21 months ago by ★ 1.3k • written 21 months ago by ★ 1.1k
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0
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10k
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Comment: Comment: How to find CpG island shore?
3.0 years ago by Pratik ★ 1.1k
0
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1
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10k
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Answer: Answer: How to find CpG island shore?
3.0 years ago by Pratik ★ 1.1k
4
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1
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1.1k
views
When running salmon or star_salmon , are samples “independent” from one another during quantification (ie. to remove low quality samples after a mult…
salmon pre-processing star_salmon rna-seq
updated 3.1 years ago by 90k • written 3.1 years ago by ★ 1.1k
0
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0
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830
views
Job: Research Technician – Computational Biology Core - (UConn CBC) - Connecticut
connecticut technician
updated 2.9 years ago by 45k • written 3.1 years ago by ★ 1.1k
12
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3
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1.6k
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Conceptual questions regarding computational genome/annotation versions and their impact on the actual truth of sequencing?
wes sequencing wgs rna-seq
updated 3.1 years ago by 4.2k • written 3.1 years ago by ★ 1.1k
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0
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1.4k
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Comment: Comment: Pros and Cons of DNA Mass Spectrometry versus WES/WGS?
3.2 years ago by Pratik ★ 1.1k
3
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2
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1.4k
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Pros and Cons of DNA Mass Spectrometry versus WES/WGS?
spec mass wes dna wgs
3.2 years ago by Pratik ★ 1.1k
0
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1
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8.2k
views
Comment: Comment: What is a count matrix for input into Seurat supposed to look like?
3.5 years ago by Pratik ★ 1.1k
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0
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44k
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Comment: Comment: How to embed known cell information into Seurat object? AddMetaData?
3.6 years ago by Pratik ★ 1.1k
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0
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2.3k
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Comment: Comment: Seurat subset cluster cell annotation
3.8 years ago by Pratik ★ 1.1k
3
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0
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2.4k
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Answer: Answer: scSeq millions of cells
3.8 years ago by Pratik ★ 1.1k
1
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1
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2.3k
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Comment: Comment: Forcing Seurat to include certain genes during integration
3.8 years ago by Pratik ★ 1.1k
0
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1
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3.1k
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Answer: Answer: scRNA seq differential gene expression analyses
3.9 years ago by Pratik ★ 1.1k
15
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4
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20k
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How to use FindSubCluster in Seurat?
seurat R single cell RNA-seq
updated 3.9 years ago by • 0 • written 4.7 years ago by ★ 1.1k
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0
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8.2k
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Comment: Comment: What is a count matrix for input into Seurat supposed to look like?
3.9 years ago by Pratik ★ 1.1k
6
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10
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8.2k
views
What is a count matrix for input into Seurat supposed to look like?
R RNA-Seq Monocle3 Seurat
updated 3.5 years ago by 45k • written 5.2 years ago by ★ 1.1k
4
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1
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3.6k
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Answer: Answer: how to find each cluster in single-cell represent which cell type?
4.0 years ago by Pratik ★ 1.1k
3
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1
reply
2.3k
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Answer: Answer: How do I download a list of genes involved in cellular metabolism (in humans) ba
4.0 years ago by Pratik ★ 1.1k
0
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1
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3.7k
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Comment: Comment: How to quickly find and filter coexpressed markers with one specific gene of int
4.0 years ago by Pratik ★ 1.1k
1
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3
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3.7k
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How to quickly find and filter coexpressed markers with one specific gene of interest in individual cells using scRNA-seq data?
scRNA-seq Seurat coexpression
updated 4.0 years ago by ▴ 270 • written 4.0 years ago by ★ 1.1k
1
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0
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1.2k
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Comment: Comment: PathFindR: Running Reactome for Mouse
4.0 years ago by Pratik ★ 1.1k
0
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0
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1.1k
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Comment: Comment: Finding players and targets of expression-regulating pathways
3.9 years ago by Pratik ★ 1.1k
0
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0
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3.7k
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Comment: Comment: How to compare expression levels of specific genes between sample groups after g
4.0 years ago by Pratik ★ 1.1k
0
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2
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3.7k
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Comment: Comment: How to compare expression levels of specific genes between sample groups after g
4.0 years ago by Pratik ★ 1.1k
6
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6
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3.7k
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How to compare expression levels of specific genes between sample groups after generating DEG list?
RNA-seq TMM edgeR
4.0 years ago by Pratik ★ 1.1k
0
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1
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1.6k
views
Comment: Comment: How to create shiny app for deseq2 object creation
4.0 years ago by Pratik ★ 1.1k
0
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0
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1.5k
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Answer: Answer: Entry level jobs
4.0 years ago by Pratik ★ 1.1k
8
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0
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2.2k
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Answer: Answer: General question about clustering in scRNAseq
4.0 years ago by Pratik ★ 1.1k
2
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1
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1.1k
views
Is a single dot on a UMAP or t-SNE for scRNA-seq - a single cell?
scRNA-seq
updated 4.1 years ago by ★ 19k • written 4.1 years ago by ★ 1.1k
0
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0
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2.8k
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Answer: Answer: How to show relabel sub cluster on the original cluster in Seurat
4.1 years ago by Pratik ★ 1.1k
1
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0
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2.8k
views
Answer: Answer: Database for Enhancers with Coordinates
4.1 years ago by Pratik ★ 1.1k
1
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1
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1.4k
views
Answer: Answer: Pathogen-drug network
4.1 years ago by Pratik ★ 1.1k
0
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0
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1.7k
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Comment: Comment: Chromosome sizes downloading (in bp).
4.1 years ago by Pratik ★ 1.1k
0
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0
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2.8k
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Comment: Comment: How to rename the elements in columns(txdb)?
4.2 years ago by Pratik ★ 1.1k
4
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3
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2.8k
views
How to rename the elements in columns(txdb)?
GenomicFeatures GenomicRanges GenomeInfoDb
4.2 years ago by Pratik ★ 1.1k
0
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0
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2.8k
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Comment: Comment: How to rename the elements from columns(txdb)?
4.2 years ago by Pratik ★ 1.1k
0
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0
replies
8.3k
views
Answer: Answer: Extracting exons and transcripts from gff3/gtf
4.2 years ago by Pratik ★ 1.1k
0
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0
replies
3.1k
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Comment: Comment: Good or bad idea to annotate with newer genome build?
4.2 years ago by Pratik ★ 1.1k
1
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0
replies
3.1k
views
Comment: Comment: Good or bad idea to annotate with newer genome build?
4.2 years ago by Pratik ★ 1.1k
4
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4
replies
3.1k
views
Good or bad idea to annotate with newer genome build?
array methylation beadchip build annotation
4.2 years ago by Pratik ★ 1.1k
174 results • Page 1 of 4
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