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Comment: Comment: How to find CpG island shore?
4 months ago by Pratik ▴ 880
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6.7k
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Answer: Answer: How to find CpG island shore?
4 months ago by Pratik ▴ 880
4
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1
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384
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When running salmon or star_salmon , are samples “independent” from one another during quantification (ie. to remove low quality samples after a mult…
salmon pre-processing star_salmon rna-seq
updated 6 months ago by 70k • written 6 months ago by ▴ 880
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364
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Job: Research Technician – Computational Biology Core - (UConn CBC) - Connecticut
connecticut technician
updated 3 months ago by 38k • written 6 months ago by ▴ 880
12
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3
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519
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Conceptual questions regarding computational genome/annotation versions and their impact on the actual truth of sequencing?
wes sequencing wgs rna-seq
updated 6 months ago by 3.5k • written 6 months ago by ▴ 880
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517
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Comment: Comment: Pros and Cons of DNA Mass Spectrometry versus WES/WGS?
7 months ago by Pratik ▴ 880
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2
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517
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Pros and Cons of DNA Mass Spectrometry versus WES/WGS?
spec mass wes dna wgs
7 months ago by Pratik ▴ 880
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4.3k
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Comment: Comment: What is a count matrix for input into Seurat supposed to look like?
10 months ago by Pratik ▴ 880
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0
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25k
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Comment: Comment: How to embed known cell information into Seurat object? AddMetaData?
11 months ago by Pratik ▴ 880
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953
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Comment: Comment: Seurat subset cluster cell annotation
14 months ago by Pratik ▴ 880
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839
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Answer: Answer: scSeq millions of cells
14 months ago by Pratik ▴ 880
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868
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Comment: Comment: Forcing Seurat to include certain genes during integration
15 months ago by Pratik ▴ 880
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1
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1.1k
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Answer: Answer: scRNA seq differential gene expression analyses
15 months ago by Pratik ▴ 880
10
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4
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8.8k
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How to use FindSubCluster in Seurat?
seurat R single cell RNA-seq
updated 15 months ago by • 0 • written 2.1 years ago by ▴ 880
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4.3k
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Comment: Comment: What is a count matrix for input into Seurat supposed to look like?
16 months ago by Pratik ▴ 880
6
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10
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4.3k
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What is a count matrix for input into Seurat supposed to look like?
R RNA-Seq Monocle3 Seurat
updated 10 months ago by 38k • written 2.6 years ago by ▴ 880
2
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1
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904
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Answer: Answer: how to find each cluster in single-cell represent which cell type?
16 months ago by Pratik ▴ 880
2
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0
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666
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Answer: Answer: How do I download a list of genes involved in cellular metabolism (in humans) ba
16 months ago by Pratik ▴ 880
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1
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1.5k
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Comment: Comment: How to quickly find and filter coexpressed markers with one specific gene of int
16 months ago by Pratik ▴ 880
1
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3
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1.5k
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How to quickly find and filter coexpressed markers with one specific gene of interest in individual cells using scRNA-seq data?
scRNA-seq Seurat coexpression
updated 16 months ago by ▴ 220 • written 16 months ago by ▴ 880
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476
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Comment: Comment: PathFindR: Running Reactome for Mouse
16 months ago by Pratik ▴ 880
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0
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440
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Comment: Comment: Finding players and targets of expression-regulating pathways
15 months ago by Pratik ▴ 880
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0
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1.8k
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Comment: Comment: How to compare expression levels of specific genes between sample groups after g
16 months ago by Pratik ▴ 880
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2
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1.8k
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Comment: Comment: How to compare expression levels of specific genes between sample groups after g
16 months ago by Pratik ▴ 880
6
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6
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1.8k
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How to compare expression levels of specific genes between sample groups after generating DEG list?
RNA-seq TMM edgeR
16 months ago by Pratik ▴ 880
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1
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678
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Comment: Comment: How to create shiny app for deseq2 object creation
16 months ago by Pratik ▴ 880
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0
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724
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Answer: Answer: Entry level jobs
16 months ago by Pratik ▴ 880
5
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0
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683
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Answer: Answer: General question about clustering in scRNAseq
17 months ago by Pratik ▴ 880
2
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1
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582
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Is a single dot on a UMAP or t-SNE for scRNA-seq - a single cell?
scRNA-seq
updated 17 months ago by ★ 14k • written 17 months ago by ▴ 880
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1.1k
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Answer: Answer: How to show relabel sub cluster on the original cluster in Seurat
18 months ago by Pratik ▴ 880
1
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0
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1.1k
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Answer: Answer: Database for Enhancers with Coordinates
18 months ago by Pratik ▴ 880
1
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1
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620
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Answer: Answer: Pathogen-drug network
18 months ago by Pratik ▴ 880
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0
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612
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Comment: Comment: Chromosome sizes downloading (in bp).
18 months ago by Pratik ▴ 880
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0
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1.0k
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Comment: Comment: How to rename the elements in columns(txdb)?
18 months ago by Pratik ▴ 880
4
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3
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1.0k
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How to rename the elements in columns(txdb)?
GenomicFeatures GenomicRanges GenomeInfoDb
18 months ago by Pratik ▴ 880
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0
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1.0k
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Comment: Comment: How to rename the elements from columns(txdb)?
18 months ago by Pratik ▴ 880
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0
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3.6k
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Answer: Answer: Extracting exons and transcripts from gff3/gtf
18 months ago by Pratik ▴ 880
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0
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1.1k
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Comment: Comment: Good or bad idea to annotate with newer genome build?
18 months ago by Pratik ▴ 880
1
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0
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1.1k
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Comment: Comment: Good or bad idea to annotate with newer genome build?
18 months ago by Pratik ▴ 880
4
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4
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1.1k
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Good or bad idea to annotate with newer genome build?
array methylation beadchip build annotation
18 months ago by Pratik ▴ 880
0
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0
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491
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Why is there not a intronsBy() function in GenomicFeatures? only intronsByTranscript()?
GenomicRanges GenomicFeatures genic introns intronsbytranscript
19 months ago by Pratik ▴ 880
1
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1
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977
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Comment: Comment: Is removing strand information when obtaining intergenic regions from GRanges ne
19 months ago by Pratik ▴ 880
1
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0
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4.4k
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Comment: Comment: How to transform the deg gene list from seurat to a gene list input to clusterPr
19 months ago by Pratik ▴ 880
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0
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3.0k
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Comment: Comment: Differential Gene Expression
19 months ago by Pratik ▴ 880
1
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2
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3.0k
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Comment: Comment: Differential Gene Expression
19 months ago by Pratik ▴ 880
1
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1
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3.0k
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Comment: Comment: Differential Gene Expression
19 months ago by Pratik ▴ 880
5
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3
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977
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Is removing strand information when obtaining intergenic regions from GRanges necessary?
GenomicRanges methylation strand intergenic genic
updated 19 months ago by 8.3k • written 19 months ago by ▴ 880
4
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1
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3.0k
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Answer: Answer: Differential Gene Expression
19 months ago by Pratik ▴ 880
0
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0
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34k
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Comment: Comment: Get chromosome sizes from fasta file
19 months ago by Pratik ▴ 880
2
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1
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694
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Answer: Answer: Internship in research
19 months ago by Pratik ▴ 880
164 results • Page 1 of 4
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