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3
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1
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6.2k
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Answer: A: Samtools Have Trouble "View" Bwa Mem Result, But Good With Bwa Sampe Result?
updated 6.1 years ago by 45k • written 11.6 years ago by 105k
0
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1
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23k
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Comment: C: Compariosn Htseq And Feature Count
updated 6.1 years ago by 45k • written 11.7 years ago by 105k
5
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3
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6.4k
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Answer: A: Mapq Scores Inside Repeats
updated 6.1 years ago by 45k • written 11.7 years ago by 105k
3
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0
replies
12k
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Comment: C: Samtools Index Segmentation Fault
updated 6.1 years ago by 45k • written 11.7 years ago by 105k
0
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1
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12k
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Comment: C: Samtools Index Segmentation Fault
updated 6.1 years ago by 45k • written 11.7 years ago by 105k
0
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0
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1.7k
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Comment: C: Exploring Wbsa What Is A-Rich And T-Rich File?
updated 6.1 years ago by 45k • written 11.7 years ago by 105k
1
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0
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7.9k
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Comment: C: Problem With Counting Mapped Reads
updated 6.1 years ago by 45k • written 11.7 years ago by 105k
0
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2
replies
9.7k
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Comment: C: Proper Way To Map Rna-Seq Data Against A Single (Or Small) Number Of Genes
updated 6.1 years ago by 45k • written 11.7 years ago by 105k
0
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0
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4.3k
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Comment: C: Bedgraph And Bigwig Files From Multiple Bams
updated 6.1 years ago by 45k • written 11.7 years ago by 105k
3
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0
replies
5.4k
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Comment: C: Sam To Bam Conversion
updated 6.1 years ago by 45k • written 11.7 years ago by 105k
3
votes
1
reply
23k
views
Comment: C: Bwa Mem Have Different Alignment Result When Using Different Threads
updated 6.1 years ago by 45k • written 11.9 years ago by 105k
0
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1
reply
11k
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Comment: C: How To Interpret Output From Bam-Readcount
updated 6.1 years ago by 45k • written 12.2 years ago by 105k
0
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1
reply
11k
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Comment: C: How To Interpret Output From Bam-Readcount
updated 6.1 years ago by 45k • written 12.2 years ago by 105k
0
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1
reply
16k
views
Comment: C: R : File Do Not Exists Error. Isilon File Path Not Recognized In R
updated 6.1 years ago by 45k • written 12.2 years ago by 105k
2
votes
1
reply
5.1k
views
Answer: A: Seeking Input On Assigning Read Counts To Contigs From De Novo Transcriptome Ass
updated 6.1 years ago by 45k • written 12.2 years ago by 105k
2
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1
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2.8k
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Comment: C: Question about featureCounts
6.1 years ago by Devon Ryan 105k
1
vote
1
reply
43k
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Comment: C: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
6.1 years ago by Devon Ryan 105k
2
votes
1
reply
43k
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Comment: C: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
6.1 years ago by Devon Ryan 105k
1
vote
2
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43k
views
Comment: C: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
6.1 years ago by Devon Ryan 105k
0
votes
0
replies
1.8k
views
Answer: C: Is it okay to use deeptools bamCompare (SES normalization) for comparisons acros
6.2 years ago by Devon Ryan 105k
2
votes
1
reply
32k
views
Comment: C: Human dna reference file with no prefix 'chr'
updated 6.2 years ago by 45k • written 11.1 years ago by 105k
2
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0
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1.5k
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Answer: A: When to run fastq-dump --split-files -X 10000 ?
6.2 years ago by Devon Ryan 105k
1
vote
1
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5.3k
views
Comment: C: Differential gene expression from 1 replicate using RPKM and edgeR
6.2 years ago by Devon Ryan 105k
0
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0
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5.4k
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Comment: C: Bowtie2 alignment help for ATAC-seq
6.2 years ago by Devon Ryan 105k
0
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0
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1.3k
views
Comment: C: How to get the extended unaligned bases at the end of the read in reference base
6.2 years ago by Devon Ryan 105k
0
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0
replies
1.4k
views
Answer: A: How to normalise RNA-sequencing data that only consists of coverage for around 2
6.2 years ago by Devon Ryan 105k
1
vote
0
replies
1.9k
views
Answer: A: fdr to p-value
6.2 years ago by Devon Ryan 105k
0
votes
0
replies
1.1k
views
Comment: C: Bowtie 2 with remote index
6.2 years ago by Devon Ryan 105k
0
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0
replies
953
views
Answer: A: Converting bisulfite-converted sequence back to genomic sequence
6.2 years ago by Devon Ryan 105k
2
votes
0
replies
3.9k
views
Answer: A: Working abroad without a PhD
6.2 years ago by Devon Ryan 105k
3
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0
replies
2.4k
views
Answer: A: samtools flagstat calculation
6.2 years ago by Devon Ryan 105k
0
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0
replies
15k
views
Comment: C: bcl2fastq with xGen Dual Index UMI Adapters to produce 3 read and 2 index fastqs
6.2 years ago by Devon Ryan 105k
1
vote
0
replies
1.6k
views
Comment: C: Error with running star via snakemake on cluster
6.2 years ago by Devon Ryan 105k
0
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0
replies
1.8k
views
Comment: C: Would you remove rRNA reads in silico before testing for diff. expression?
6.2 years ago by Devon Ryan 105k
0
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2
replies
18k
views
Comment: C: STAR genome index with and/or with out *.gtf annotation
6.2 years ago by Devon Ryan 105k
0
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1
reply
1.8k
views
Comment: C: Would you remove rRNA reads in silico before testing for diff. expression?
6.2 years ago by Devon Ryan 105k
3
votes
0
replies
2.3k
views
Answer: C: .bam format is not enough for mapped long reads
updated 6.2 years ago by 90k • written 6.2 years ago by 105k
2
votes
1
reply
3.4k
views
Comment: C: Import Module error Pysam
6.2 years ago by Devon Ryan 105k
0
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0
replies
2.7k
views
Comment: C: Plotting chip signal at TSSs with deeptools
6.2 years ago by Devon Ryan 105k
0
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1
reply
7.2k
views
Comment: C: Can I use own transcriptome without GTF file?
updated 6.2 years ago by 45k • written 10.4 years ago by 105k
2
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2
replies
2.7k
views
Answer: A: Plotting chip signal at TSSs with deeptools
6.3 years ago by Devon Ryan 105k
0
votes
0
replies
1.7k
views
Comment: C: Reporting methylation of both Cs and Gs, or only Cs
6.3 years ago by Devon Ryan 105k
2
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1
reply
1.7k
views
Answer: A: Reporting methylation of both Cs and Gs, or only Cs
6.3 years ago by Devon Ryan 105k
0
votes
0
replies
8.1k
views
Comment: C: To generate an scRNA counts file using barcodes.tsv, genes.tsv and matrix.mtx fi
6.3 years ago by Devon Ryan 105k
0
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1
reply
2.4k
views
Comment: C: How could I find Differential Genes in Expression Matrix File NOT gset by R?
6.3 years ago by Devon Ryan 105k
1
vote
0
replies
3.3k
views
Comment: C: Using Diffbind R-studio
6.3 years ago by Devon Ryan 105k
2
votes
1
reply
3.5k
views
Answer: A: High G and low A,C,T content in the 1-10bp of Read2 file in a paired-end whole g
6.3 years ago by Devon Ryan 105k
1
vote
0
replies
2.6k
views
Comment: C: Error: se does not inherit from class SummarizedExperiment
6.3 years ago by Devon Ryan 105k
0
votes
0
replies
11k
views
Comment: C: How to install R packages that need dev program like RCurl, png, XML by conda ?
6.3 years ago by Devon Ryan 105k
0
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0
replies
8.2k
views
Comment: C: What is the best way to quantile normalize expression matrix ?
updated 6.3 years ago by 45k • written 11.5 years ago by 105k
10,053 results • Page 13 of 202
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