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Comment: Comment: What is a good ChIPseq peak distance cutoff?
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 4.7k
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1
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6.3k
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Comment: Comment: Reordering the bam file
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 4.7k
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1
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2.0k
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Answer: Answer: What are less and greater in fc.kegg.p?
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 4.7k
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Comment: C: what are the control samples when using MACS to find ChiP-seq peaks?
11.1 years ago by Ming Tommy Tang ★ 4.7k
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0
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3.8k
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Answer: Answer: Chip-Seq GO analysis
updated 3.7 years ago by 45k • written 11.1 years ago by ★ 4.7k
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6.8k
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Answer: Answer: Drawing ChIPseq graphics
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 4.7k
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22k
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Answer: A: Trimming fastq with quality
11.1 years ago by Ming Tommy Tang ★ 4.7k
16
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1
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69k
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Answer: Answer: How to convert to .SRA files to .FQ (FASTQ)
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 4.7k
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Answer: Answer: Depth of RNAseq with sensitive detection
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 4.7k
2
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1
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4.4k
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Answer: Answer: List of known transcription factor binding sites along with the type of transcri
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 4.7k
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3.8k
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Comment: Comment: Quality control ChiP-Seq
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 4.7k
1
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1
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7.6k
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Comment: C: chip-seq low signal vs background
11.1 years ago by Ming Tommy Tang ★ 4.7k
2
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0
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6.8k
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Answer: Answer: Drawing ChIPseq graphics
updated 3.8 years ago by 45k • written 11.1 years ago by ★ 4.7k
1
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0
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2.8k
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Comment: C: Mouse Chipseq Depth of seq
11.1 years ago by Ming Tommy Tang ★ 4.7k
3
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1
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2.8k
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Answer: Answer: Interpreting of ChiP-seq results
updated 3.8 years ago by 45k • written 11.2 years ago by ★ 4.7k
2
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0
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4.3k
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Comment: A: tools for mutation detection in gene
11.2 years ago by Ming Tommy Tang ★ 4.7k
1
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0
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4.6k
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Answer: Answer: Co-occurring TF motifs in peak file from ChIP-seq experiment
updated 3.8 years ago by 45k • written 11.2 years ago by ★ 4.7k
0
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1
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3.2k
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Comment: Comment: Different results from Different Cufflinks versions
updated 3.8 years ago by 45k • written 11.2 years ago by ★ 4.7k
2
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1
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7.5k
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GAGE pathway analysis for RNA-seq
RNA-Seq
updated 3.8 years ago by 45k • written 11.2 years ago by ★ 4.7k
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0
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3.2k
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Answer: A: Different results from Different Cufflinks versions
11.2 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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7.1k
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Comment: C: DESeq MA-plot diagnosis
11.2 years ago by Ming Tommy Tang ★ 4.7k
3
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6.1k
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Answer: Answer: dealing with BATCH effect/ donor variation in RNA seq data
updated 3.8 years ago by 45k • written 11.2 years ago by ★ 4.7k
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0
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8.6k
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Comment: C: Deseq's plotMA color-coding at random?
11.2 years ago by Ming Tommy Tang ★ 4.7k
0
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1
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8.6k
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Comment: A: Deseq's plotMA color-coding at random?
11.2 years ago by Ming Tommy Tang ★ 4.7k
1
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2
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7.1k
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DESeq MA-plot diagnosis
RNA-Seq
updated 3.8 years ago by 45k • written 11.2 years ago by ★ 4.7k
0
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0
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5.1k
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Comment: C: count the number of transcription factor binding sites
11.2 years ago by Ming Tommy Tang ★ 4.7k
0
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1
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5.1k
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Comment: A: count the number of transcription factor binding sites
11.2 years ago by Ming Tommy Tang ★ 4.7k
9
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2
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26k
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Answer: Answer: bigwig to peak
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 4.7k
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0
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3.8k
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Answer: Answer: Python workflow/pipeline repository?
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 4.7k
2
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1
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4.1k
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Answer: Answer: Useful bioinformatics source code resources?
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 4.7k
2
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0
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8.1k
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Answer: Answer: chip-seq analysis (bowtie2, MACS2)
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 4.7k
2
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0
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4.5k
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Answer: A: macs and bedtools
11.2 years ago by Ming Tommy Tang ★ 4.7k
1
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0
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7.0k
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Answer: Answer: normalization RNA-seq data between different types of libraries
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 4.7k
0
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0
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8.8k
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Answer: Answer: Should the reads of biological replicates be combined for ChIP-seq peak calling?
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 4.7k
0
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0
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14k
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Comment: Comment: Converting .sra files to fastq
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 4.7k
1
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0
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7.0k
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Answer: Answer: Counting number of reads in my peak file
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 4.7k
0
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1
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6.0k
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Comment: Comment: DESeq differential expression
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 4.7k
0
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1
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4.5k
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Answer: Answer: Visualize reads in BAM file
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 4.7k
3
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0
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4.2k
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Answer: Answer: Identification of functionally relevant regions from ChIP-seq experiments
updated 3.9 years ago by 45k • written 11.2 years ago by ★ 4.7k
0
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0
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3.6k
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Comment: C: Are adapters removed for fastq files dumped from sra from GEO?
11.2 years ago by Ming Tommy Tang ★ 4.7k
2
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2
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3.6k
views
Are adapters removed for fastq files dumped from sra from GEO?
fastq
updated 11.2 years ago by 105k • written 11.2 years ago by ★ 4.7k
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0
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8.2k
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Answer: A: Best values to use for a heatmap comparing conditions comprised of biological re
11.3 years ago by Ming Tommy Tang ★ 4.7k
0
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1
reply
5.3k
views
Answer: A: chipseq data normalization
11.3 years ago by Ming Tommy Tang ★ 4.7k
5
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2
replies
4.3k
views
How to resize a GenomicRange objects centered on a DNA motif
ChIP-Seq R
updated 4.0 years ago by 45k • written 11.4 years ago by ★ 4.7k
0
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1
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14k
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Comment: C: htseq-count for pair-end RNA-seq
11.4 years ago by Ming Tommy Tang ★ 4.7k
0
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1
reply
14k
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Comment: C: htseq-count for pair-end RNA-seq
11.4 years ago by Ming Tommy Tang ★ 4.7k
0
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0
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6.1k
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Comment: C: HiSeq2000 RNA-seq QC
11.4 years ago by Ming Tommy Tang ★ 4.7k
15
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12
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6.1k
views
HiSeq2000 RNA-seq QC
rna-seq
updated 3.7 years ago by 45k • written 11.4 years ago by ★ 4.7k
0
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0
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18k
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Answer: A: Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
11.4 years ago by Ming Tommy Tang ★ 4.7k
2
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1
reply
2.8k
views
Answer: A: Wig Files- Macs Vs. Igvtools Count In Focal Amplification
11.4 years ago by Ming Tommy Tang ★ 4.7k
477 results • Page 9 of 10
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