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2
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reply
648
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How to change the design DESeqDataSet to calculate log2foldChange in different way?
design DESeqDataSetFromMatrix condition DESeq2
2.2 years ago by Amr ▴ 180
2
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0
replies
648
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Answer: Answer: How to change the design DESeqDataSet to calculate log2foldChange in different w
2.2 years ago by Amr ▴ 180
0
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1
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1.5k
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Comment: Comment: What is the best way to visualize the enrichment plots together after obtaining
2.2 years ago by Amr ▴ 180
0
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3
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1.5k
views
What is the best way to visualize the enrichment plots together after obtaining them from GSEA report?
ES enrichment_plot GSEA
updated 2.2 years ago by ★ 2.0k • written 2.2 years ago by ▴ 180
0
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0
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1.5k
views
Comment: Comment: How to plot all enrichment plots from GSEA in one single plot in python or R?
updated 2.1 years ago by 44k • written 2.2 years ago by ▴ 180
0
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0
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1.1k
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Comment: Comment: How to add illustrative bar in ggplot2?
2.3 years ago by Amr ▴ 180
1
vote
1
reply
728
views
How to add color to specific groups of a boxplot in Python?
boxplot python pandas
updated 2.3 years ago by 11k • written 2.3 years ago by ▴ 180
1
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1
reply
938
views
Error in linear regression for multiple data-frames with matplotlib
linear_regression matplotlib
updated 2.3 years ago by 148k • written 2.3 years ago by ▴ 180
1
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0
replies
938
views
Answer: Answer: Error in linear regression for multiple data-frames with matplotlib
2.3 years ago by Amr ▴ 180
0
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0
replies
830
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Comment: Comment: How to change values on X-axis in matplotlib ?
2.3 years ago by Amr ▴ 180
1
vote
2
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830
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How to change values on X-axis in matplotlib ?
matplotlib python pandas
updated 2.3 years ago by 44k • written 2.3 years ago by ▴ 180
0
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1
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1.1k
views
Comment: Comment: How to add illustrative bar in ggplot2?
2.3 years ago by Amr ▴ 180
0
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1
reply
1.1k
views
Comment: Comment: How to add illustrative bar in ggplot2?
2.3 years ago by Amr ▴ 180
2
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6
replies
1.1k
views
How to add illustrative bar in ggplot2?
ggplot2 R
2.3 years ago by Amr ▴ 180
0
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1
reply
2.8k
views
Comment: Comment: R-studio freezes error
2.3 years ago by Amr ▴ 180
0
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1
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2.8k
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Comment: Comment: R-studio freezes error
2.3 years ago by Amr ▴ 180
0
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1
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2.8k
views
Comment: Comment: R-studio freezes error
2.3 years ago by Amr ▴ 180
2
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10
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2.8k
views
R-studio freezes error
RStudio offtopic
updated 2.3 years ago by 44k • written 2.3 years ago by ▴ 180
2
votes
1
reply
644
views
What are the differences between significance, effect and standard deviation upon producing mitch reports?
R significance Standard-Deviation mitch
updated 4 months ago by 44k • written 2.3 years ago by ▴ 180
2
votes
0
replies
644
views
Answer: Answer: What are the differences between significance, effect and standard deviation upo
2.3 years ago by Amr ▴ 180
2
votes
1
reply
531
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mitch report inquiries
mitch R
2.3 years ago by Amr ▴ 180
2
votes
0
replies
531
views
Answer: Answer: mitch report inquiries
2.3 years ago by Amr ▴ 180
1
vote
3
replies
1.1k
views
How Wald test calculates p-values in DESeq2?
Wald p-value DESeq2
2.3 years ago by Amr ▴ 180
1
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0
replies
1.1k
views
Answer: Answer: How Wald test calculates p-values in DESeq2?
2.3 years ago by Amr ▴ 180
0
votes
0
replies
751
views
Comment: Comment: How to calculate effect size between two gene sets?
2.3 years ago by Amr ▴ 180
5
votes
2
replies
751
views
How to calculate effect size between two gene sets?
distance effectSize euclidean
updated 2.3 years ago by 148k • written 2.3 years ago by ▴ 180
2
votes
3
replies
812
views
Error in mitch in R
mitch symbols gene R
updated 2.3 years ago by 13k • written 2.3 years ago by ▴ 180
2
votes
0
replies
812
views
Answer: Answer: Error in mitch in R
updated 2.3 years ago by 13k • written 2.3 years ago by ▴ 180
6
votes
5
replies
3.1k
views
How to select rows which has NA in any column in the dataframe in R?
dataframe NA R
updated 2.3 years ago by 13k • written 2.3 years ago by ▴ 180
0
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0
replies
3.1k
views
Comment: Comment: How to select rows which has NA in any column in the dataframe in R?
2.3 years ago by Amr ▴ 180
0
votes
2
replies
661
views
Error in mitch reports in R
mitch R
updated 12 months ago by ★ 1.9k • written 2.3 years ago by ▴ 180
16
votes
8
replies
2.4k
views
6 follow
How to convert Ensemble Gene IDs to gene symbols or Entrez Gene IDs?
Gene Symbols mitch IDs
updated 2.3 years ago by 102k • written 2.3 years ago by ▴ 180
0
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0
replies
18k
views
Comment: Comment: How to update rlang in R?
2.3 years ago by Amr ▴ 180
0
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1
reply
18k
views
Comment: Comment: How to update rlang in R?
2.3 years ago by Amr ▴ 180
0
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1
reply
18k
views
Comment: Comment: How to update rlang in R?
2.3 years ago by Amr ▴ 180
1
vote
1
reply
18k
views
Comment: Comment: How to update rlang in R?
2.3 years ago by Amr ▴ 180
1
vote
8
replies
18k
views
How to update rlang in R?
rlang R
2.3 years ago by Amr ▴ 180
0
votes
0
replies
812
views
Comment: Comment: Error in mitch in R
2.3 years ago by Amr ▴ 180
0
votes
0
replies
903
views
Comment: Comment: How to take data from dataframe to put it in another dataframe in R?
2.3 years ago by Amr ▴ 180
0
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0
replies
903
views
Comment: Comment: How to take data from dataframe to put it in another dataframe in R?
2.3 years ago by Amr ▴ 180
4
votes
4
replies
903
views
How to take data from dataframe to put it in another dataframe in R?
dataframe R
2.3 years ago by Amr ▴ 180
5
votes
9
replies
1.9k
views
Convert Gene Ensemble IDs to Gene Symbols on R
Ensemble R Gene-Symbols biomart
updated 19 months ago by 44k • written 2.3 years ago by ▴ 180
0
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1
reply
1.9k
views
Comment: Comment: Convert Gene Ensemble IDs to Gene Symbols on R
2.3 years ago by Amr ▴ 180
0
votes
1
reply
1.9k
views
Comment: Comment: Convert Gene Ensemble IDs to Gene Symbols on R
2.3 years ago by Amr ▴ 180
1
vote
1
reply
1.9k
views
Comment: Comment: Convert Gene Ensemble IDs to Gene Symbols on R
updated 2.3 years ago by 148k • written 2.3 years ago by ▴ 180
0
votes
1
reply
580
views
Depending on which counts number, the genes are overexpressed either up or down regulated in GSEA ?
gene GSEA geneset
updated 2.3 years ago by ★ 1.8k • written 2.3 years ago by ▴ 180
7
votes
2
replies
9.9k
views
How to use biomart on R to convert Ensembl Gene IDs to Symbols?
IDs R biomart Ensembl Symbols
updated 2.3 years ago by ★ 2.4k • written 2.3 years ago by ▴ 180
2
votes
2
replies
792
views
Why the number of genes decreased after dds (DESeqDataSetFromMatrix)?
R DESeq2
updated 15 months ago by 44k • written 2.3 years ago by ▴ 180
0
votes
3
replies
825
views
Why it is recommended to run samples from all groups together while performing DESeq although the design variables are not used when estimating the s…
DESeq2 GSEA R DEG
updated 2.3 years ago by 102k • written 2.3 years ago by ▴ 180
0
votes
0
replies
825
views
Comment: Comment: Why it is recommended to run samples from all groups together while performing D
2.3 years ago by Amr ▴ 180
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