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3
votes
1
reply
596
views
What is the normalization status of metabric data?
metabric normalization microarray cbioportal
updated 8 days ago by ▴ 20 • written 19 months ago by ★ 4.3k
2
votes
0
replies
11k
views
Answer: Answer: fpkm to tpm conversion
3 months ago by DareDevil ★ 4.3k
0
votes
0
replies
770
views
Answer: Answer: How to remove binary files which are installed into /usr/local/bin
3 months ago by DareDevil ★ 4.3k
6
votes
2
replies
746
views
samtools index: failed to create index. ([E::hts_idx_push] NO_COOR reads not in a single block )
bam samtools hisat2
updated 3 months ago by ▴ 680 • written 3 months ago by ★ 4.3k
1
vote
0
replies
1.6k
views
Comment: Comment: Survival Analysis for RNASeqV2 processed by PAM50 prediction subtype method
3 months ago by DareDevil ★ 4.3k
1
vote
0
replies
19k
views
Comment: Comment: HISAT2 command help
3 months ago by DareDevil ★ 4.3k
2
votes
0
replies
374
views
Answer: Answer: identify genes
3 months ago by DareDevil ★ 4.3k
2
votes
1
reply
749
views
Answer: Answer: Reference genome, BWA and right algorithm
3 months ago by DareDevil ★ 4.3k
2
votes
0
replies
5.8k
views
Answer: Answer: Trimming by fastp for multiple PE fastq.gz files using shell script
4 months ago by DareDevil ★ 4.3k
2
votes
4
replies
592
views
How should I run ssgsea analysis ?
functional TPM enrichment gsea ssgsea
updated 4 months ago by 43k • written 5 months ago by ★ 4.3k
0
votes
0
replies
3.9k
views
Comment: Comment: Convert FPKM to TPM in R
5 months ago by DareDevil ★ 4.3k
4
votes
3
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3.9k
views
Answer: Answer: Convert FPKM to TPM in R
3 months ago by DareDevil ★ 4.3k
3
votes
1
reply
549
views
How will you perform batch correction in DESeq2 when you don't have any group information?
batch-correction DESeq2
updated 5 months ago by 43k • written 5 months ago by ★ 4.3k
3
votes
0
replies
521
views
Answer: Answer: How to interpret the Variant Allele Frequency??
6 months ago by DareDevil ★ 4.3k
2
votes
0
replies
465
views
Answer: Answer: I need help with univariate logistic regression in a set of microarray data
updated 6 months ago by 43k • written 6 months ago by ★ 4.3k
6
votes
1
reply
401
views
How to retrieve sample informations from given ID from Sequence Read Archives?
eutils SRA
updated 5 months ago by 43k • written 7 months ago by ★ 4.3k
2
votes
0
replies
4.6k
views
Comment: Comment: bcftools multiallelic split not working
updated 7 months ago by 43k • written 7 months ago by ★ 4.3k
2
votes
0
replies
963
views
Comment: Comment: Number of genes covered in WES
8 months ago by DareDevil ★ 4.3k
2
votes
0
replies
287
views
How to perform functional enrichment of Metabolites?
PerformPSEA metaboanalyst GSEA metabolites
8 months ago by DareDevil ★ 4.3k
3
votes
1
reply
963
views
Answer: Answer: Number of genes covered in WES
8 months ago by DareDevil ★ 4.3k
2
votes
1
reply
829
views
Comment: Comment: Are there any ways to delete multiple jobs at Ensembl VEP?
9 months ago by DareDevil ★ 4.3k
7
votes
4
replies
829
views
Are there any ways to delete multiple jobs at Ensembl VEP?
api ensembl vep
updated 9 months ago by ★ 2.4k • written 9 months ago by ★ 4.3k
4
votes
1
reply
18k
views
Answer: Answer: BEDOPS gtf2bed conversion error with Ensembl GTF
updated 7 months ago by 43k • written 9 months ago by ★ 4.3k
3
votes
0
replies
878
views
Comment: Comment: GOSemSim - difference between mgeneSim and mgoSim
9 months ago by DareDevil ★ 4.3k
4
votes
1
reply
878
views
Answer: Answer: GOSemSim - difference between mgeneSim and mgoSim
9 months ago by DareDevil ★ 4.3k
4
votes
0
replies
878
views
Answer: Answer: GOSemSim - difference between mgeneSim and mgoSim
9 months ago by DareDevil ★ 4.3k
2
votes
0
replies
37k
views
Answer: Answer: generating genome indexes with STAR
9 months ago by DareDevil ★ 4.3k
2
votes
0
replies
2.2k
views
Answer: Answer: Remove short sequences with length < 50% from a multi-fasta file
9 months ago by DareDevil ★ 4.3k
1
vote
0
replies
1.2k
views
Comment: Comment: Does anyone know what cmpress is?
9 months ago by DareDevil ★ 4.3k
1
vote
0
replies
30k
views
Comment: Comment: Where To Download Pam50 Gene Set?
9 months ago by DareDevil ★ 4.3k
1
vote
0
replies
1.5k
views
Comment: Comment: PAM50 analysis from RNAseq data
9 months ago by DareDevil ★ 4.3k
3
votes
0
replies
682
views
Answer: Answer: Is reciprocal best hit method applicable for non-coding RNA to find orthologs?
9 months ago by DareDevil ★ 4.3k
5
votes
1
reply
847
views
Answer: Answer: Counting distance between kmer instances in a sequence
9 months ago by DareDevil ★ 4.3k
2
votes
0
replies
2.5k
views
Answer: Answer: Single end RNAseq data strandedness infer-experiment-py
9 months ago by DareDevil ★ 4.3k
2
votes
0
replies
2.4k
views
Comment: Comment: Question about featureCounts strand options
9 months ago by DareDevil ★ 4.3k
2
votes
0
replies
5.7k
views
Comment: Comment: mistakenly ran featureCounts in paired-end mode on single-read data
9 months ago by DareDevil ★ 4.3k
5
votes
0
replies
726
views
Answer: Answer: drug sensitivity prediction
10 months ago by DareDevil ★ 4.3k
2
votes
1
reply
34k
views
Answer: Answer: Generating consensus sequence from bam file
10 months ago by DareDevil ★ 4.3k
2
votes
1
reply
451
views
What is the possibility of Depth (DP) being higher than the coverage
GATK DP Coverage Depth HaplotypeCaller
updated 10 months ago by 11k • written 10 months ago by ★ 4.3k
3
votes
0
replies
12k
views
Comment: Comment: Building Dict File for GATK
11 months ago by DareDevil ★ 4.3k
2
votes
0
replies
6.4k
views
Comment: Comment: Human reference files in HG38 GATK resource bundle
11 months ago by DareDevil ★ 4.3k
2
votes
0
replies
4.9k
views
Comment: Comment: GATK4 VariantRecalibrator resource error
11 months ago by DareDevil ★ 4.3k
1
vote
0
replies
1.4k
views
Comment: Comment: DESeq2 multiple conditions, time points and sample types
12 months ago by DareDevil ★ 4.3k
2
votes
1
reply
1.4k
views
Answer: Answer: DESeq2 multiple conditions, time points and sample types
12 months ago by DareDevil ★ 4.3k
1
vote
0
replies
1.4k
views
Comment: Comment: DESeq2 multiple conditions, time points and sample types
12 months ago by DareDevil ★ 4.3k
1
vote
0
replies
1.4k
views
Comment: Comment: DESeq2 multiple conditions, time points and sample types
12 months ago by DareDevil ★ 4.3k
6
votes
1
reply
2.6k
views
Comment: Comment: None of the keys entered are valid keys for 'ENSEMBL'. Please use the keys metho
updated 12 months ago by 43k • written 12 months ago by ★ 4.3k
4
votes
1
reply
2.6k
views
Comment: Comment: None of the keys entered are valid keys for 'ENSEMBL'. Please use the keys metho
12 months ago by DareDevil ★ 4.3k
6
votes
1
reply
2.6k
views
Answer: Answer: None of the keys entered are valid keys for 'ENSEMBL'. Please use the keys metho
updated 12 months ago by 43k • written 12 months ago by ★ 4.3k
4
votes
1
reply
1.3k
views
Comment: Comment: How to Remove Sample Names from Heatmap
12 months ago by DareDevil ★ 4.3k
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