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How to annotate your vcf files with the GT (genotype) field
samtools mpileup vcf genotype sequencing
updated 3.8 years ago by • 0 • written 9.5 years ago by ▴ 990
6
votes
5
replies
4.5k
views
How Do You Align Or Compare Two Networks Content-Wise?
network graphs comparison
updated 4.6 years ago by 20 • written 14.9 years ago by ▴ 990
9
votes
4
replies
12k
views
samtools mpileup - how to extract the alternative allele counts for *each* alternative base
samtools mpileup alt mutation
updated 5.7 years ago by ▴ 10 • written 9.7 years ago by ▴ 990
0
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1
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2.3k
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Comment: C: bcftools call transforms the mpileup -3aag variant into a TAAGAAGA>TAAGA variant
updated 6.0 years ago by 45k • written 10.0 years ago by ▴ 990
1
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1
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7.6k
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Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
updated 6.0 years ago by 45k • written 10.1 years ago by ▴ 990
2
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0
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7.6k
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Answer: A: Mpileup BCF/VCF output without non-ref base 'X'?
updated 6.0 years ago by 45k • written 10.0 years ago by ▴ 990
0
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1
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7.6k
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Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
updated 6.0 years ago by 45k • written 10.0 years ago by ▴ 990
0
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0
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7.6k
views
Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
updated 6.0 years ago by 45k • written 10.1 years ago by ▴ 990
0
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0
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7.6k
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Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
updated 6.0 years ago by 45k • written 10.1 years ago by ▴ 990
0
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0
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28k
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Comment: C: Converting TCGA expression data from FPKM to TPM
updated 6.0 years ago by 45k • written 9.8 years ago by ▴ 990
0
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0
replies
16k
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Comment: C: How To Convert Uniprot Ids To Ensemble Gene/Transcript Ids
updated 6.0 years ago by 45k • written 10.9 years ago by ▴ 990
0
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0
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10k
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Comment: C: Bioinformatics Posters Collection
updated 6.1 years ago by 45k • written 14.1 years ago by ▴ 990
1
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0
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6.4k
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Comment: C: Check Ancestry Relation Between Go Terms
updated 6.1 years ago by 45k • written 14.6 years ago by ▴ 990
3
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0
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16k
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Answer: A: Heatmap Visualisations?
updated 6.1 years ago by 45k • written 14.6 years ago by ▴ 990
2
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1
reply
26k
views
Answer: A: Bioinformatics "Cheat Sheet"
updated 6.1 years ago by 45k • written 14.6 years ago by ▴ 990
1
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0
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7.6k
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Answer: A: Web Resources To Find Cancer Indication Where A Given Gene Is Amplified
updated 6.8 years ago by 45k • written 14.9 years ago by ▴ 990
0
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0
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16k
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Comment: C: Extracting Reads Containing A Specific Variant From A Bam File
7.3 years ago by Michi ▴ 990
1
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1
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17k
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Answer: A: Iterating through paired-end reads in samtools / pysam
7.4 years ago by Michi ▴ 990
0
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0
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6.0k
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Comment: C: Sorting bed files with bash sort
updated 7.6 years ago by 45k • written 7.6 years ago by ▴ 990
0
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1
reply
4.6k
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Comment: C: General questions about running GSEAPreranked
7.6 years ago by Michi ▴ 990
0
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0
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11k
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Answer: A: How to find out the insert size in RNA seq data
7.6 years ago by Michi ▴ 990
0
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0
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2.4k
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Comment: C: Custom genome and tophat
8.9 years ago by Michi ▴ 990
0
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1
reply
2.4k
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Comment: C: Custom genome and tophat
8.9 years ago by Michi ▴ 990
1
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4
replies
2.4k
views
Custom genome and tophat
sequencing RNA-Seq tophat
8.9 years ago by Michi ▴ 990
0
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0
replies
1.2k
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Single Gene-Fusion detection - resource effective approaches?
RNA-Seq gene-fusion alignment sequencing
8.9 years ago by Michi ▴ 990
1
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0
replies
10k
views
Answer: A: R -- Get Exonic Ranges Of A Gene'S Transcripts Given Its Name?
9.1 years ago by Michi ▴ 990
0
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1
reply
6.1k
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Comment: C: How to annotate your vcf files with the GT (genotype) field
9.5 years ago by Michi ▴ 990
0
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1
reply
6.1k
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Comment: C: How to annotate your vcf files with the GT (genotype) field
9.5 years ago by Michi ▴ 990
0
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1
reply
63k
views
Comment: C: Tools to view fastq file
9.5 years ago by Michi ▴ 990
0
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1
reply
70k
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Comment: C: How To Sort Bed Format File
9.5 years ago by Michi ▴ 990
0
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0
replies
3.2k
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Comment: C: Download link to ensembl human GRCH37 transcript support level (TSL) flags infor
9.6 years ago by Michi ▴ 990
0
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0
replies
12k
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Comment: C: samtools mpileup - how to extract the alternative allele counts for *each* alter
9.6 years ago by Michi ▴ 990
0
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1
reply
12k
views
Comment: C: samtools mpileup - how to extract the alternative allele counts for *each* alter
9.7 years ago by Michi ▴ 990
7
votes
15
replies
7.6k
views
Mpileup BCF/VCF output without non-ref base 'X'?
vcf mpileup sequencing bcf samtools
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 990
3
votes
3
replies
2.3k
views
bcftools call transforms the mpileup -3aag variant into a TAAGAAGA>TAAGA variant
mpileup sequencing samtools indel bcftools
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 990
0
votes
1
reply
7.6k
views
Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
10.1 years ago by Michi ▴ 990
0
votes
1
reply
7.6k
views
Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
10.1 years ago by Michi ▴ 990
0
votes
1
reply
7.6k
views
Comment: C: Mpileup BCF/VCF output without non-ref base 'X'?
10.1 years ago by Michi ▴ 990
0
votes
0
replies
2.5k
views
Comment: Comment: Samtools Mpileup With Refrence Addition
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 990
4
votes
3
replies
4.3k
views
Alignment plot of a small extract (sequence) from a .bam file
bam SNP sequencing plot alignment
updated 3.1 years ago by 45k • written 10.1 years ago by ▴ 990
0
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0
replies
49k
views
Comment: C: How To Create Mutation Diagram In R Or In Any Tools?
10.2 years ago by Michi ▴ 990
6
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1
reply
49k
views
Answer: Answer: How To Create Mutation Diagram In R Or In Any Tools?
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 990
0
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0
replies
1.7k
views
Answer: A: Advanced options Oncodrive
10.9 years ago by Michi ▴ 990
1
vote
0
replies
19k
views
Comment: Comment: Clustering Go Terms?
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 990
0
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1
reply
3.4k
views
Comment: C: PFAM domains for all protein Isoforms from same protein
10.9 years ago by Michi ▴ 990
1
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3
replies
3.4k
views
PFAM domains for all protein Isoforms from same protein
Isoforms uniprot protein-domain pfam
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 990
0
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0
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4.5k
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Comment: Comment: Finding Gff File For All Uniprot Protein Isoform Domain Annotations
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 990
1
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0
replies
2.8k
views
Comment: Comment: Old releases of NCBI Gene (annotation)
updated 4.6 years ago by 45k • written 11.0 years ago by ▴ 990
5
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2
replies
2.8k
views
Old releases of NCBI Gene (annotation)
Gene mapping
updated 4.6 years ago by 45k • written 11.0 years ago by ▴ 990
7
votes
0
replies
5.1k
views
Tutorial: How To Perform A Hierarchical Clustering Using Interactive Heatmaps From Gitools?
clustering
updated 2.7 years ago by 45k • written 11.6 years ago by ▴ 990
91 results • Page 1 of 2
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