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0
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6.2k
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Comment: C: GWAS on dosage data - interaction
6.1 years ago by chrchang523 11k
3
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1
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1.3k
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Answer: A: PLINK : Error: --tdt requires a case/control phenotype.
6.1 years ago by chrchang523 11k
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0
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9.8k
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Comment: C: Duplicate Variant IDs Issue
6.1 years ago by chrchang523 11k
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9.8k
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Comment: C: Duplicate Variant IDs Issue
6.1 years ago by chrchang523 11k
1
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1
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9.8k
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Answer: A: Duplicate Variant IDs Issue
6.1 years ago by chrchang523 11k
1
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0
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1.5k
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Answer: A: How does plink compute n_geno ("number of potentially valid call(s)")?
6.2 years ago by chrchang523 11k
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1
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1.4k
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Comment: C: fcGENE error during conversion from .ped to .gen
6.2 years ago by chrchang523 11k
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0
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10k
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Comment: C: Forcing A1/A2 alleles in PLINK in a VCF phased file
6.2 years ago by chrchang523 11k
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0
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3.6k
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Answer: A: PLINK - error in --make-bed
6.2 years ago by chrchang523 11k
4
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0
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6.2k
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Comment: C: is fortran still used in bioinformatics?
6.2 years ago by chrchang523 11k
1
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6.0k
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Answer: A: use `plink --rel-cutoff` to remove related samples
6.2 years ago by chrchang523 11k
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1
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1.6k
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Comment: C: Strands are reversed
6.2 years ago by chrchang523 11k
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2
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6.2k
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Comment: C: is fortran still used in bioinformatics?
6.2 years ago by chrchang523 11k
9
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0
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6.2k
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Answer: A: is fortran still used in bioinformatics?
6.2 years ago by chrchang523 11k
0
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0
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2.1k
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Comment: C: ANGSD tped output errors
6.3 years ago by chrchang523 11k
1
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1
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2.4k
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Answer: A: Is there a FASTA file containing 1000 Genomes variant information to check refer
6.3 years ago by chrchang523 11k
1
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1
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2.0k
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Comment: C: How are plink's hardcalls calculated?
6.3 years ago by chrchang523 11k
6
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0
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2.0k
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Answer: A: How are plink's hardcalls calculated?
updated 6.3 years ago by 153k • written 6.3 years ago by 11k
4
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17k
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Answer: C: plink2 bgen to vcf ukbiobank
6.3 years ago by chrchang523 11k
0
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0
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3.0k
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Comment: C: Error: fatalx: ID too long convertf (eigensoft)
6.3 years ago by chrchang523 11k
0
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1
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4.9k
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Comment: C: Estimating LD score in PLINK
updated 6.3 years ago by 35k • written 6.3 years ago by 11k
0
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1
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2.3k
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Comment: C: Sex inconsistency in 1000 genomes phase 3 TSI samples
6.3 years ago by chrchang523 11k
1
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1
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2.3k
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Comment: C: Sex inconsistency in 1000 genomes phase 3 TSI samples
6.3 years ago by chrchang523 11k
2
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0
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2.8k
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Answer: A: convention from vcf to plink
6.3 years ago by chrchang523 11k
0
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1
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4.9k
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Comment: C: Estimating LD score in PLINK
6.3 years ago by chrchang523 11k
0
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0
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1.4k
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Comment: C: Plink formatting issues map file has zeros for chromosome and physical position
6.3 years ago by chrchang523 11k
0
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0
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2.8k
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Answer: A: is it take long time for LD based puring by plink v 1.07
6.3 years ago by chrchang523 11k
0
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0
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2.4k
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Comment: C: Error: Failed to open files
6.3 years ago by chrchang523 11k
3
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1
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5.2k
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Answer: A: PLINK --bmerge log file: Warning: Variants have the the same position
6.3 years ago by chrchang523 11k
1
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1
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3.9k
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Answer: A: PLINK Quality Control: --impute-sex returns PEDSEX of 0 for one individual. Is I
6.3 years ago by chrchang523 11k
6
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0
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5.3k
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Answer: A: What is the best GWAS software suitable for extremely large dataset? (ex. Plink,
6.3 years ago by chrchang523 11k
5
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0
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11k
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Answer: A: Change rsID to chromosome:location in bim files for plink
updated 6.3 years ago by 12k • written 6.3 years ago by 11k
2
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1
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2.3k
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Answer: A: Sex inconsistency in 1000 genomes phase 3 TSI samples
6.4 years ago by chrchang523 11k
0
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1
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8.0k
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Comment: C: PLINK: filter for indels
6.4 years ago by chrchang523 11k
0
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1
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8.0k
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Comment: C: PLINK: filter for indels
6.4 years ago by chrchang523 11k
3
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1
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8.0k
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Answer: A: PLINK: filter for indels
6.4 years ago by chrchang523 11k
0
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0
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1.5k
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Comment: C: PLINK LD matrix determine what variants were removed
6.4 years ago by chrchang523 11k
1
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1
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1.5k
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Answer: A: PLINK LD matrix determine what variants were removed
6.4 years ago by chrchang523 11k
2
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0
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5.2k
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Comment: C: Convert IMPUTE2 to VCF while keeping phase information
6.4 years ago by chrchang523 11k
1
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2
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5.7k
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Answer: A: PLINK vcf to binary files error: Unused command line option: --vcf
6.4 years ago by chrchang523 11k
2
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0
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4.2k
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Answer: A: merging multiple chromosomes in a single file
6.4 years ago by chrchang523 11k
1
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1
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4.0k
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Comment: C: Interpreting plink snp tagging output
6.5 years ago by chrchang523 11k
1
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1
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4.0k
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Comment: C: Interpreting plink snp tagging output
6.5 years ago by chrchang523 11k
1
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1
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4.0k
views
Comment: C: Interpreting plink snp tagging output
6.5 years ago by chrchang523 11k
1
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1
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4.0k
views
Comment: C: Interpreting plink snp tagging output
6.5 years ago by chrchang523 11k
3
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1
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4.0k
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Answer: A: Interpreting plink snp tagging output
6.5 years ago by chrchang523 11k
1
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0
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1.6k
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Comment: C: Chromosome X GWAS in related individuals
6.5 years ago by chrchang523 11k
0
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0
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1.3k
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Answer: A: SNP IDs changed when making .ped files using PLINK
6.5 years ago by chrchang523 11k
2
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0
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2.7k
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Answer: A: How to force missing values for genotype in PLINK?
updated 6.5 years ago by 12k • written 6.5 years ago by 11k
0
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0
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4.9k
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Comment: C: Locus Zoom Issuing "No valid markers in VCF file" on a VCF created in Plink 1.9
6.5 years ago by chrchang523 11k
914 results • Page 11 of 19
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