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Comment: C: Using Cufflinks with SRA Reads
9.0 years ago by Ron ★ 1.2k
2
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7
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2.7k
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RNA-seq quality control
RNA-Seq next-gen alignment QC STAR
updated 9.0 years ago by 105k • written 9.0 years ago by ★ 1.2k
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0
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2.0k
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Answer: A: Tools for classifying human and mouse reads for WGS data
updated 9.0 years ago by 154k • written 9.0 years ago by ★ 1.2k
4
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5
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8.0k
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Remove batch effect for differential expression
RNA-Seq DEseq R next-gen
updated 4.3 years ago by • 0 • written 9.0 years ago by ★ 1.2k
2
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1
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4.2k
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Answer: A: determining read depth for every position in a sequence
9.0 years ago by Ron ★ 1.2k
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0
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3.8k
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Comment: C: Can I use HTSeq-count with a merged.gtf files I created with Cuffmerge?
9.0 years ago by Ron ★ 1.2k
2
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0
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11k
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Answer: A: Gallery: Computational tools for DNA methylation
9.0 years ago by Ron ★ 1.2k
0
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1
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1.9k
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Answer: A: Using Cufflinks with SRA Reads
9.0 years ago by Ron ★ 1.2k
0
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0
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2.0k
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Comment: C: SNP-SNP interaction db and tools
9.0 years ago by Ron ★ 1.2k
0
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1
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1.9k
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Comment: C: Using Cufflinks with SRA Reads
9.0 years ago by Ron ★ 1.2k
0
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0
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4.5k
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Comment: C: low expressed gene filtration, quantile normalization and log2 transformation, w
9.0 years ago by Ron ★ 1.2k
0
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1
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8.5k
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Comment: C: Script to sort bam file not working
9.0 years ago by Ron ★ 1.2k
0
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1
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8.5k
views
Answer: A: Script to sort bam file not working
9.0 years ago by Ron ★ 1.2k
1
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0
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3.9k
views
Comment: C: Time series RNA-Seq with Time-Matched Controls
9.0 years ago by Ron ★ 1.2k
2
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1
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3.9k
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Answer: A: Time series RNA-Seq with Time-Matched Controls
9.0 years ago by Ron ★ 1.2k
4
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0
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39k
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Answer: A: How to import huge .csv files in R studio?
9.0 years ago by Ron ★ 1.2k
0
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1
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3.2k
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Comment: C: Comparison of TCGA and SRA data
9.0 years ago by Ron ★ 1.2k
0
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0
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2.0k
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Answer: A: What HLA tool for commercial usage?
9.0 years ago by Ron ★ 1.2k
1
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0
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4.3k
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Answer: A: Estimating tumor purity from genomic data
9.0 years ago by Ron ★ 1.2k
2
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0
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8.1k
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Answer: A: alignment with BWA mem
9.0 years ago by Ron ★ 1.2k
0
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0
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3.4k
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Answer: Answer: Where to find drug response data on the NCI60
updated 3.8 years ago by 45k • written 9.0 years ago by ★ 1.2k
1
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0
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12k
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Answer: Answer: Copy number variation subtypes
updated 3.7 years ago by 45k • written 9.0 years ago by ★ 1.2k
0
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0
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24k
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Comment: C: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
9.0 years ago by Ron ★ 1.2k
1
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0
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4.8k
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Answer: A: Thresholds to filter out variants from vcf file
9.0 years ago by Ron ★ 1.2k
0
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0
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5.1k
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Comment: C: STAR can not detect this chimeric read
9.0 years ago by Ron ★ 1.2k
0
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0
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2.9k
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Answer: A: How To Visualize The Phylogenetic Relationship Among A Group Of Organisms In A P
9.0 years ago by Ron ★ 1.2k
0
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0
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3.3k
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Answer: A: Identifying Phylogeny Visualisation Software
9.0 years ago by Ron ★ 1.2k
0
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0
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5.4k
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Answer: A: Phylogenetic Tree
9.0 years ago by Ron ★ 1.2k
2
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0
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15k
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Answer: Answer: How to remove reads associated with a specific region from bam file?
updated 2.8 years ago by 45k • written 9.0 years ago by ★ 1.2k
0
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0
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6.4k
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Answer: A: Visualize Gene Fusions
9.0 years ago by Ron ★ 1.2k
2
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2
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6.9k
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Answer: A: Best software for differential gene expression analysis?
9.0 years ago by Ron ★ 1.2k
0
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0
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3.4k
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Comment: C: bwa and bowtie2 bamfile format
9.0 years ago by Ron ★ 1.2k
0
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0
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1.9k
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Answer: A: Mapping drug targets to KEGG pathways
9.0 years ago by Ron ★ 1.2k
0
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0
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4.1k
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Comment: Comment: converting the format of read files in GEO datasets (SRA) to fasta and fatsq
updated 2.8 years ago by 45k • written 9.0 years ago by ★ 1.2k
0
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0
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4.6k
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Answer: A: Generate Heatmap after DEseq2 analysis
9.0 years ago by Ron ★ 1.2k
0
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1
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4.1k
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Comment: C: Comparison of DEG lists
9.0 years ago by Ron ★ 1.2k
1
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0
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2.6k
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Answer: A: Does TCGA has RNA-seq data of healthy sample colon tissue? If it has , how can I
9.0 years ago by Ron ★ 1.2k
0
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2
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2.5k
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Comment: C: problem with counting reads per gene using HTseq
9.0 years ago by Ron ★ 1.2k
1
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0
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9.8k
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Comment: C: Using ComBat on RNASeq FPKM counts
9.0 years ago by Ron ★ 1.2k
0
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0
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4.2k
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Answer: A: differentially expression analysis using raw read counts
9.0 years ago by Ron ★ 1.2k
1
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0
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1.7k
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Answer: A: Need help from pathway enrichment analysis
9.0 years ago by Ron ★ 1.2k
0
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0
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32k
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Answer: A: Determine Transcription Factors For Genes
9.1 years ago by Ron ★ 1.2k
1
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0
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5.6k
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Answer: A: How To Get A List Of Genes Regulated By A Transcription Factor?
9.1 years ago by Ron ★ 1.2k
0
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0
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15k
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Answer: A: pca analysis for differential gene expression data of microarray samples of simi
9.1 years ago by Ron ★ 1.2k
0
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1
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2.5k
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Comment: C: Dealing with very unbalanced class sizes in differential expression
9.1 years ago by Ron ★ 1.2k
0
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0
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2.6k
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Answer: A: is there anyway to investigate a specific pathway
9.1 years ago by Ron ★ 1.2k
3
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1
reply
15k
views
Answer: A: pca analysis for differential gene expression data of microarray samples of simi
9.1 years ago by Ron ★ 1.2k
0
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0
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6.9k
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Answer: A: What tools were used to draw these phylogenetic trees?
9.1 years ago by Ron ★ 1.2k
0
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0
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2.4k
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Comment: C: Where to find drug-gene interactions with IC50 values?
9.1 years ago by Ron ★ 1.2k
2
votes
0
replies
42k
views
Answer: A: Converting Bam To Fastq
9.1 years ago by Ron ★ 1.2k
315 results • Page 4 of 7
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