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15
votes
8
replies
11k
views
9 follow
Combining Microarray and RNAseq data
RNA-Seq normalization R microarray
updated 6 months ago by ▴ 30 • written 8.4 years ago by ★ 1.2k
17
votes
15
replies
31k
views
9 follow
Mapping Mouse gene names to Human gene names
RNA-Seq PDX
updated 16 months ago by 43k • written 8.8 years ago by ★ 1.2k
6
votes
6
replies
8.6k
views
Merge vcf files from Multiple Samples
vcftools vcf
updated 2.3 years ago by • 0 • written 10.0 years ago by ★ 1.2k
6
votes
6
replies
4.3k
views
Clustering of genes using FPKM
RNA-Seq clustering FPKM R bioconductor
updated 3.6 years ago by 3.2k • written 9.4 years ago by ★ 1.2k
1
vote
7
replies
7.1k
views
6 follow
Using Samtools mpileup with Varscan
next-gen RNA-Seq varscan samtools
updated 18 months ago by 43k • written 8.8 years ago by ★ 1.2k
3
votes
2
replies
2.3k
views
Validating Predictions Of Small Insertions / Deletions
gatk variant
updated 4.3 years ago by 20 • written 10.2 years ago by ★ 1.2k
0
votes
0
replies
5.7k
views
Comment: C: Filter overlapping reads in pysam
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 1.2k
0
votes
1
reply
5.7k
views
Comment: C: Filter overlapping reads in pysam
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 1.2k
0
votes
1
reply
5.7k
views
Comment: C: Filter overlapping reads in pysam
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 1.2k
0
votes
2
replies
8.6k
views
Comment: C: Merge vcf files from Multiple Samples
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 1.2k
0
votes
0
replies
34k
views
Comment: C: Samtools And Region List
updated 4.4 years ago by 43k • written 10.0 years ago by ★ 1.2k
0
votes
1
reply
2.7k
views
Comment: C: Protein Domains from fusions
updated 4.4 years ago by 43k • written 8.3 years ago by ★ 1.2k
0
votes
1
reply
7.6k
views
Answer: A: Oncofuse: Prediction Of Driver Gene Fusions From Ngs Data
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 1.2k
0
votes
0
replies
2.6k
views
Comment: C: methods of integrating microarray data and RNAseq data
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 1.2k
22
votes
45
replies
13k
views
9 follow
Tool to separate human and mouse rna seq reads
RNA-Seq next-gen-sequencing
updated 15 months ago by 43k • written 8.9 years ago by ★ 1.2k
0
votes
0
replies
2.7k
views
Comment: C: FPKM for Normal vs Tumor
updated 4.8 years ago by 43k • written 9.4 years ago by ★ 1.2k
0
votes
5
replies
2.7k
views
FPKM for Normal vs Tumor
FPKM RNA-Seq cufflinks
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 1.2k
1
vote
0
replies
6.4k
views
Visualize gene fusions in IGV
RNA-Seq next-gen
4.9 years ago by Ron ★ 1.2k
0
votes
0
replies
13k
views
Comment: C: Tool to separate human and mouse rna seq reads
5.0 years ago by Ron ★ 1.2k
1
vote
0
replies
3.0k
views
Answer: A: Gene expression profile analysis
5.0 years ago by Ron ★ 1.2k
0
votes
0
replies
1.5k
views
Comment: C: Drugs targeting Gene Fusions
5.0 years ago by Ron ★ 1.2k
1
vote
2
replies
1.5k
views
Drugs targeting Gene Fusions
RNA-Seq next-gen
updated 5.0 years ago by 4.5k • written 5.0 years ago by ★ 1.2k
0
votes
0
replies
30k
views
Comment: C: Drug to Target/Gene/Protein Interaction Databases
5.0 years ago by Ron ★ 1.2k
5
votes
10
replies
1.8k
views
How to recreate this dot plot?
R next-gen RNA-Seq
updated 5.1 years ago by 11k • written 5.1 years ago by ★ 1.2k
0
votes
0
replies
1.8k
views
Comment: C: Plots in R for bioinformatics analyses
5.1 years ago by Ron ★ 1.2k
4
votes
0
replies
10k
views
Answer: A: Saving individual clusters from heatmaps
5.1 years ago by Ron ★ 1.2k
0
votes
0
replies
3.2k
views
Comment: C: Counting number of base pairs and features in each bed file
5.2 years ago by Ron ★ 1.2k
0
votes
1
reply
3.2k
views
Comment: C: Counting number of base pairs and features in each bed file
5.2 years ago by Ron ★ 1.2k
0
votes
1
reply
3.2k
views
Comment: C: Counting number of base pairs and features in each bed file
5.2 years ago by Ron ★ 1.2k
2
votes
6
replies
3.2k
views
Counting number of base pairs and features in each bed file
RNA-Seq ngs
5.2 years ago by Ron ★ 1.2k
0
votes
1
reply
13k
views
Comment: C: Tool to separate human and mouse rna seq reads
updated 5.6 years ago by 43k • written 8.6 years ago by ★ 1.2k
0
votes
1
reply
13k
views
Comment: C: Tool to separate human and mouse rna seq reads
updated 5.6 years ago by 43k • written 8.6 years ago by ★ 1.2k
0
votes
0
replies
13k
views
Comment: C: Tool to separate human and mouse rna seq reads
updated 5.6 years ago by 43k • written 8.6 years ago by ★ 1.2k
0
votes
0
replies
13k
views
Comment: Comment: Tool to separate human and mouse rna seq reads
updated 19 months ago by 43k • written 8.6 years ago by ★ 1.2k
0
votes
1
reply
13k
views
Comment: Comment: Tool to separate human and mouse rna seq reads
updated 15 months ago by 43k • written 8.6 years ago by ★ 1.2k
0
votes
1
reply
13k
views
Comment: C: Tool to separate human and mouse ran seq reads
updated 5.6 years ago by 43k • written 8.9 years ago by ★ 1.2k
0
votes
1
reply
13k
views
Comment: Comment: Tool to separate human and mouse rna seq reads
updated 15 months ago by 43k • written 8.9 years ago by ★ 1.2k
0
votes
1
reply
1.5k
views
Database of Mutations and the associated drugs
WES ngs
updated 5.7 years ago by 87k • written 5.7 years ago by ★ 1.2k
1
vote
2
replies
2.4k
views
List of known fusions
RNA-Seq fusion ngs next-gen
updated 5.8 years ago by ▴ 420 • written 7.4 years ago by ★ 1.2k
2
votes
5
replies
5.2k
views
Visualize Gene Fusions
RNA-Seq fusion next-gen R
updated 5.8 years ago by ▴ 420 • written 7.6 years ago by ★ 1.2k
6
votes
6
replies
7.2k
views
Interpreting GSEA results
RNA-Seq GSEA next-gen
updated 5.9 years ago by ▴ 20 • written 6.4 years ago by ★ 1.2k
5
votes
6
replies
8.1k
views
Deconvolution methods on RNAseq data
RNA-Seq next-gen sequencing R bioconductor
updated 6.0 years ago by ▴ 120 • written 7.2 years ago by ★ 1.2k
0
votes
1
reply
1.2k
views
Comment: C: Validating driver genes
6.0 years ago by Ron ★ 1.2k
0
votes
0
replies
787
views
Ratio of samples to do differential expression
RNA-Seq next-gen
6.1 years ago by Ron ★ 1.2k
0
votes
0
replies
2.6k
views
Comment: C: Using Cufflinks for Novel Transcripts
6.2 years ago by Ron ★ 1.2k
0
votes
2
replies
2.6k
views
Using Cufflinks for Novel Transcripts
RNA-Seq cufflinks
updated 6.2 years ago by 11k • written 6.2 years ago by ★ 1.2k
0
votes
0
replies
2.0k
views
Comment: C: Does Cufflinks report chimeric transcripts/fusion genes?
6.2 years ago by Ron ★ 1.2k
0
votes
2
replies
2.0k
views
Mutation analysis on RNAseq
RNA-Seq mutation next-gen SNP snpEff
updated 6.4 years ago by ★ 2.5k • written 7.6 years ago by ★ 1.2k
0
votes
0
replies
7.2k
views
Comment: C: Interpreting GSEA results
6.4 years ago by Ron ★ 1.2k
0
votes
0
replies
7.2k
views
Comment: C: Interpreting GSEA results
6.4 years ago by Ron ★ 1.2k
315 results • Page 1 of 7
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