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Comment: Comment: Calculating ethnicity of a sample VCF
7 weeks ago by GabrielMontenegro ▴ 670
0
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0
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1.4k
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Answer: Answer: vcftools not ouputting log file when run from perl
4 months ago by GabrielMontenegro ▴ 670
2
votes
2
replies
483
views
Interpretting phastConsElements from USCS Table Browser
ucsc conservation genomics phastcons bioinformatics
updated 9 months ago by ▴ 610 • written 9 months ago by ▴ 670
0
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3
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2.7k
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Problems Using Ldhat Example Files
ld
updated 18 months ago by 20 • written 8.4 years ago by ▴ 670
0
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0
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482
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Comment: C: Placing random non-overlaping segments across genome [GenomicRanges]
23 months ago by GabrielMontenegro ▴ 670
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0
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3.7k
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Comment: C: Generate random genomic positions with R
23 months ago by GabrielMontenegro ▴ 670
1
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2
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482
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Placing random non-overlaping segments across genome [GenomicRanges]
r genomicranges
23 months ago by GabrielMontenegro ▴ 670
2
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8
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2.7k
views
7 follow
Converting ms or msms output to PLINK or VCF files
SNP genome sequence
updated 24 months ago by • 0 • written 5.3 years ago by ▴ 670
0
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0
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390
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Rounding error in allele frequency estimates in PLINK
SNP plink
2.1 years ago by GabrielMontenegro ▴ 670
0
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0
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1.1k
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Comment: C: Get the longest transcript in GenomicRanges
2.1 years ago by GabrielMontenegro ▴ 670
0
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2
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1.1k
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Comment: C: Get the longest transcript in GenomicRanges
2.1 years ago by GabrielMontenegro ▴ 670
0
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0
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1.1k
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Comment: C: Get the longest transcript in GenomicRanges
2.1 years ago by GabrielMontenegro ▴ 670
0
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0
replies
1.1k
views
Comment: C: Get the longest transcript in GenomicRanges
2.1 years ago by GabrielMontenegro ▴ 670
2
votes
8
replies
1.1k
views
Get the longest transcript in GenomicRanges
ggbio r genomicranges
2.1 years ago by GabrielMontenegro ▴ 670
1
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3
replies
3.8k
views
SNP scoring using PLINK
plink SNP
updated 2.1 years ago by 20 • written 6.9 years ago by ▴ 670
0
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1
reply
4.9k
views
Comment: C: Gene plot similar to LocusZoom
updated 2.5 years ago by 36k • written 6.4 years ago by ▴ 670
11
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17
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4.9k
views
Remove not polymorphic sites from VCF
vcf genome
updated 4 months ago by ▴ 210 • written 3.4 years ago by ▴ 670
0
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1
reply
6.0k
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Comment: C: Forcing A1/A2 alleles in PLINK in a VCF phased file
3.0 years ago by GabrielMontenegro ▴ 670
3
votes
1
reply
2.4k
views
Exclude sites on the basis of the proportion of missing data using BCFTOOLS
genome vcf vcftools bcftools
3.1 years ago by GabrielMontenegro ▴ 670
0
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0
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2.8k
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Comment: C: Estimating LD score in PLINK
3.1 years ago by GabrielMontenegro ▴ 670
0
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1
reply
2.8k
views
Comment: C: Estimating LD score in PLINK
3.1 years ago by GabrielMontenegro ▴ 670
0
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4
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2.8k
views
Estimating LD score in PLINK
plink ld ldscore
updated 3.1 years ago by 36k • written 3.1 years ago by ▴ 670
0
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2
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3.1k
views
Single-Tissue eQTLs: P-value threshold in GTEX ??
snp RNA-Seq
updated 3.3 years ago by 82k • written 5.1 years ago by ▴ 670
0
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1
reply
4.9k
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Comment: C: Remove not polymorphic sites from VCF
3.4 years ago by GabrielMontenegro ▴ 670
15
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5
replies
3.9k
views
Keep variants with 0% missing in VCF
vcf bcftools
updated 3.4 years ago by 82k • written 3.4 years ago by ▴ 670
2
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0
replies
1.3k
views
Comment: C: FATAL ERROR Exhausted system memory (PLINK 1.07)
3.4 years ago by GabrielMontenegro ▴ 670
1
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1
reply
3.1k
views
Comment: C: How to explain my QQ-plot result
3.4 years ago by GabrielMontenegro ▴ 670
0
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1
reply
4.9k
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Comment: C: Remove not polymorphic sites from VCF
3.4 years ago by GabrielMontenegro ▴ 670
0
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1
reply
4.9k
views
Comment: C: Remove not polymorphic sites from VCF
3.4 years ago by GabrielMontenegro ▴ 670
0
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0
replies
4.9k
views
Comment: C: Remove not polymorphic sites from VCF
3.4 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
4.9k
views
Comment: C: Remove not polymorphic sites from VCF
3.4 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
4.9k
views
Comment: C: Remove not polymorphic sites from VCF
3.4 years ago by GabrielMontenegro ▴ 670
0
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1
reply
4.9k
views
Comment: C: Remove not polymorphic sites from VCF
3.4 years ago by GabrielMontenegro ▴ 670
0
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1
reply
2.2k
views
Comment: C: Haplotype block in PLINK using r2 values
3.6 years ago by GabrielMontenegro ▴ 670
0
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1
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2.2k
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Comment: C: Haplotype block in PLINK using r2 values
3.6 years ago by GabrielMontenegro ▴ 670
0
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5
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2.2k
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Haplotype block in PLINK using r2 values
plink SNP LD haplotypes
3.6 years ago by GabrielMontenegro ▴ 670
9
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13
replies
6.0k
views
Forcing A1/A2 alleles in PLINK in a VCF phased file
SNP PLINK VCF
updated 3.7 years ago by • 0 • written 4.8 years ago by ▴ 670
5
votes
2
replies
4.3k
views
Interpreting Ldhat Outputs
recombination
updated 3.8 years ago by • 0 • written 8.4 years ago by ▴ 670
0
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0
replies
13k
views
Answer: A: Visualize Effect Of Snp Variant On Protein Structure
updated 3.8 years ago by 36k • written 5.3 years ago by ▴ 670
0
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1
reply
1.5k
views
No output estimating LD between SNPs in VCF using PLINK
plink vcf
updated 3.9 years ago by 82k • written 3.9 years ago by ▴ 670
2
votes
1
reply
2.2k
views
Identifying mutations between haplotypes using haploNet (pegas) in R
R pegas haplotypes phylogenetics
updated 4.0 years ago by ▴ 30 • written 4.3 years ago by ▴ 670
0
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0
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17k
views
Comment: C: LD-decay in a r2 vs distance(cm) plot
4.4 years ago by GabrielMontenegro ▴ 670
0
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0
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2.6k
views
Answer: A: tools for Population branch statistics (PBS)
4.4 years ago by GabrielMontenegro ▴ 670
0
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0
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9.4k
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Comment: C: What is population branch statistic (PBS)?
4.4 years ago by GabrielMontenegro ▴ 670
1
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1
reply
9.4k
views
Answer: A: What is population branch statistic (PBS)?
4.4 years ago by GabrielMontenegro ▴ 670
0
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1
reply
2.9k
views
Merging inconsistencies in PLINK
SNP PLINK
updated 4.6 years ago by 20 • written 4.8 years ago by ▴ 670
0
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3
replies
9.4k
views
Comment: C: How to interpret XPEHH (recent selection) score?
4.7 years ago by GabrielMontenegro ▴ 670
0
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1
reply
2.6k
views
Subsetting individuals in PLINK when IDs contain underscores "_"
plink
updated 4.8 years ago by ▴ 280 • written 4.8 years ago by ▴ 670
0
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1
reply
6.0k
views
Comment: C: Forcing A1/A2 alleles in PLINK in a VCF phased file
4.8 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
6.0k
views
Comment: C: Forcing A1/A2 alleles in PLINK in a VCF phased file
4.8 years ago by GabrielMontenegro ▴ 670
154 results • Page 1 of 4
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