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2
votes
9
replies
3.2k
views
9 follow
Converting ms or msms output to PLINK or VCF files
SNP genome sequence
updated 9 months ago by ▴ 30 • written 6.2 years ago by ▴ 670
0
votes
0
replies
4.0k
views
Comment: Comment: Calculating ethnicity of a sample VCF
12 months ago by GabrielMontenegro ▴ 670
0
votes
0
replies
2.1k
views
Answer: Answer: vcftools not ouputting log file when run from perl
15 months ago by GabrielMontenegro ▴ 670
2
votes
2
replies
810
views
Interpretting phastConsElements from USCS Table Browser
phastcons conservation genomics ucsc
updated 3 months ago by 39k • written 20 months ago by ▴ 670
0
votes
3
replies
3.0k
views
Problems Using Ldhat Example Files
ld
updated 2.5 years ago by 20 • written 9.3 years ago by ▴ 670
0
votes
0
replies
719
views
Comment: C: Placing random non-overlaping segments across genome [GenomicRanges]
2.9 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
4.4k
views
Comment: C: Generate random genomic positions with R
2.9 years ago by GabrielMontenegro ▴ 670
1
vote
2
replies
719
views
Placing random non-overlaping segments across genome [GenomicRanges]
r genomicranges
2.9 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
465
views
Rounding error in allele frequency estimates in PLINK
SNP plink
3.0 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
1.6k
views
Comment: C: Get the longest transcript in GenomicRanges
3.0 years ago by GabrielMontenegro ▴ 670
0
votes
2
replies
1.6k
views
Comment: C: Get the longest transcript in GenomicRanges
3.0 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
1.6k
views
Comment: C: Get the longest transcript in GenomicRanges
3.0 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
1.6k
views
Comment: C: Get the longest transcript in GenomicRanges
3.0 years ago by GabrielMontenegro ▴ 670
2
votes
8
replies
1.6k
views
Get the longest transcript in GenomicRanges
ggbio r genomicranges
3.0 years ago by GabrielMontenegro ▴ 670
1
vote
3
replies
4.1k
views
SNP scoring using PLINK
plink SNP
updated 8 months ago by 39k • written 7.8 years ago by ▴ 670
0
votes
1
reply
5.3k
views
Comment: C: Gene plot similar to LocusZoom
updated 3.4 years ago by 39k • written 7.4 years ago by ▴ 670
15
votes
17
replies
6.9k
views
Remove not polymorphic sites from VCF
vcf genome
updated 15 months ago by ▴ 270 • written 4.4 years ago by ▴ 670
0
votes
1
reply
7.0k
views
Comment: C: Forcing A1/A2 alleles in PLINK in a VCF phased file
3.9 years ago by GabrielMontenegro ▴ 670
4
votes
1
reply
3.1k
views
Exclude sites on the basis of the proportion of missing data using BCFTOOLS
genome vcf vcftools bcftools
4.0 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
3.7k
views
Comment: C: Estimating LD score in PLINK
4.0 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
3.7k
views
Comment: C: Estimating LD score in PLINK
4.0 years ago by GabrielMontenegro ▴ 670
0
votes
4
replies
3.7k
views
Estimating LD score in PLINK
plink ld ldscore
updated 4.0 years ago by 39k • written 4.0 years ago by ▴ 670
0
votes
2
replies
3.5k
views
Single-Tissue eQTLs: P-value threshold in GTEX ??
snp RNA-Seq
updated 4.2 years ago by 85k • written 6.1 years ago by ▴ 670
0
votes
1
reply
6.9k
views
Comment: C: Remove not polymorphic sites from VCF
4.3 years ago by GabrielMontenegro ▴ 670
15
votes
5
replies
4.9k
views
Keep variants with 0% missing in VCF
vcf bcftools
updated 4.3 years ago by 85k • written 4.3 years ago by ▴ 670
2
votes
0
replies
1.5k
views
Comment: C: FATAL ERROR Exhausted system memory (PLINK 1.07)
4.3 years ago by GabrielMontenegro ▴ 670
1
vote
1
reply
3.4k
views
Comment: C: How to explain my QQ-plot result
4.4 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
6.9k
views
Comment: C: Remove not polymorphic sites from VCF
4.4 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
6.9k
views
Comment: C: Remove not polymorphic sites from VCF
4.4 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
6.9k
views
Comment: C: Remove not polymorphic sites from VCF
4.4 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
6.9k
views
Comment: C: Remove not polymorphic sites from VCF
4.4 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
6.9k
views
Comment: C: Remove not polymorphic sites from VCF
4.4 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
6.9k
views
Comment: C: Remove not polymorphic sites from VCF
4.4 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
2.6k
views
Comment: C: Haplotype block in PLINK using r2 values
4.5 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
2.6k
views
Comment: C: Haplotype block in PLINK using r2 values
4.5 years ago by GabrielMontenegro ▴ 670
0
votes
5
replies
2.6k
views
Haplotype block in PLINK using r2 values
plink SNP LD haplotypes
4.5 years ago by GabrielMontenegro ▴ 670
9
votes
13
replies
7.0k
views
Forcing A1/A2 alleles in PLINK in a VCF phased file
SNP PLINK VCF
updated 4.7 years ago by • 0 • written 5.7 years ago by ▴ 670
5
votes
2
replies
4.6k
views
Interpreting Ldhat Outputs
recombination
updated 4.7 years ago by • 0 • written 9.3 years ago by ▴ 670
0
votes
0
replies
14k
views
Answer: A: Visualize Effect Of Snp Variant On Protein Structure
updated 4.7 years ago by 39k • written 6.3 years ago by ▴ 670
0
votes
1
reply
1.7k
views
No output estimating LD between SNPs in VCF using PLINK
plink vcf
updated 4.8 years ago by 85k • written 4.8 years ago by ▴ 670
3
votes
2
replies
2.5k
views
Identifying mutations between haplotypes using haploNet (pegas) in R
R pegas haplotypes phylogenetics
updated 21 days ago by ▴ 40 • written 5.2 years ago by ▴ 670
0
votes
0
replies
20k
views
Comment: C: LD-decay in a r2 vs distance(cm) plot
5.3 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
2.9k
views
Answer: A: tools for Population branch statistics (PBS)
5.3 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
12k
views
Comment: C: What is population branch statistic (PBS)?
5.3 years ago by GabrielMontenegro ▴ 670
1
vote
1
reply
12k
views
Answer: A: What is population branch statistic (PBS)?
5.3 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
3.1k
views
Merging inconsistencies in PLINK
SNP PLINK
updated 5.6 years ago by 20 • written 5.7 years ago by ▴ 670
0
votes
3
replies
10k
views
Comment: C: How to interpret XPEHH (recent selection) score?
5.6 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
3.0k
views
Subsetting individuals in PLINK when IDs contain underscores "_"
plink
updated 5.7 years ago by ▴ 280 • written 5.7 years ago by ▴ 670
0
votes
1
reply
7.0k
views
Comment: C: Forcing A1/A2 alleles in PLINK in a VCF phased file
5.7 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
7.0k
views
Comment: C: Forcing A1/A2 alleles in PLINK in a VCF phased file
5.7 years ago by GabrielMontenegro ▴ 670
154 results • Page 1 of 4
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