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0
votes
0
replies
3.4k
views
Comment:
Comment: Calculating ethnicity of a sample VCF
7 weeks ago by
GabrielMontenegro
▴ 670
0
votes
0
replies
1.4k
views
Answer:
Answer: vcftools not ouputting log file when run from perl
4 months ago by
GabrielMontenegro
▴ 670
2
votes
2
replies
483
views
Interpretting phastConsElements from USCS Table Browser
ucsc
conservation
genomics
phastcons
bioinformatics
updated 9 months ago by
Luis Nassar
▴ 610 • written 9 months ago by
GabrielMontenegro
▴ 670
0
votes
3
replies
2.7k
views
Problems Using Ldhat Example Files
ld
updated 18 months ago by
Biostar
20 • written 8.4 years ago by
GabrielMontenegro
▴ 670
0
votes
0
replies
482
views
Comment:
C: Placing random non-overlaping segments across genome [GenomicRanges]
23 months ago by
GabrielMontenegro
▴ 670
0
votes
0
replies
3.7k
views
Comment:
C: Generate random genomic positions with R
23 months ago by
GabrielMontenegro
▴ 670
1
vote
2
replies
482
views
Placing random non-overlaping segments across genome [GenomicRanges]
r
genomicranges
23 months ago by
GabrielMontenegro
▴ 670
2
votes
8
replies
2.7k
views
7 follow
Converting ms or msms output to PLINK or VCF files
SNP
genome
sequence
updated 24 months ago by
alex.klassmann
• 0 • written 5.3 years ago by
GabrielMontenegro
▴ 670
0
votes
0
replies
390
views
Rounding error in allele frequency estimates in PLINK
SNP
plink
2.1 years ago by
GabrielMontenegro
▴ 670
0
votes
0
replies
1.1k
views
Comment:
C: Get the longest transcript in GenomicRanges
2.1 years ago by
GabrielMontenegro
▴ 670
0
votes
2
replies
1.1k
views
Comment:
C: Get the longest transcript in GenomicRanges
2.1 years ago by
GabrielMontenegro
▴ 670
0
votes
0
replies
1.1k
views
Comment:
C: Get the longest transcript in GenomicRanges
2.1 years ago by
GabrielMontenegro
▴ 670
0
votes
0
replies
1.1k
views
Comment:
C: Get the longest transcript in GenomicRanges
2.1 years ago by
GabrielMontenegro
▴ 670
2
votes
8
replies
1.1k
views
Get the longest transcript in GenomicRanges
ggbio
r
genomicranges
2.1 years ago by
GabrielMontenegro
▴ 670
1
vote
3
replies
3.8k
views
SNP scoring using PLINK
plink
SNP
updated 2.1 years ago by
Biostar
20 • written 6.9 years ago by
GabrielMontenegro
▴ 670
0
votes
1
reply
4.9k
views
Comment:
C: Gene plot similar to LocusZoom
updated 2.5 years ago by
Ram
36k • written 6.4 years ago by
GabrielMontenegro
▴ 670
11
votes
17
replies
4.9k
views
Remove not polymorphic sites from VCF
vcf
genome
updated 4 months ago by
Denis
▴ 210 • written 3.4 years ago by
GabrielMontenegro
▴ 670
0
votes
1
reply
6.0k
views
Comment:
C: Forcing A1/A2 alleles in PLINK in a VCF phased file
3.0 years ago by
GabrielMontenegro
▴ 670
3
votes
1
reply
2.4k
views
Exclude sites on the basis of the proportion of missing data using BCFTOOLS
genome
vcf
vcftools
bcftools
3.1 years ago by
GabrielMontenegro
▴ 670
0
votes
0
replies
2.8k
views
Comment:
C: Estimating LD score in PLINK
3.1 years ago by
GabrielMontenegro
▴ 670
0
votes
1
reply
2.8k
views
Comment:
C: Estimating LD score in PLINK
3.1 years ago by
GabrielMontenegro
▴ 670
0
votes
4
replies
2.8k
views
Estimating LD score in PLINK
plink
ld
ldscore
updated 3.1 years ago by
Ram
36k • written 3.1 years ago by
GabrielMontenegro
▴ 670
0
votes
2
replies
3.1k
views
Single-Tissue eQTLs: P-value threshold in GTEX ??
snp
RNA-Seq
updated 3.3 years ago by
Kevin Blighe
82k • written 5.1 years ago by
GabrielMontenegro
▴ 670
0
votes
1
reply
4.9k
views
Comment:
C: Remove not polymorphic sites from VCF
3.4 years ago by
GabrielMontenegro
▴ 670
15
votes
5
replies
3.9k
views
Keep variants with 0% missing in VCF
vcf
bcftools
updated 3.4 years ago by
Kevin Blighe
82k • written 3.4 years ago by
GabrielMontenegro
▴ 670
2
votes
0
replies
1.3k
views
Comment:
C: FATAL ERROR Exhausted system memory (PLINK 1.07)
3.4 years ago by
GabrielMontenegro
▴ 670
1
vote
1
reply
3.1k
views
Comment:
C: How to explain my QQ-plot result
3.4 years ago by
GabrielMontenegro
▴ 670
0
votes
1
reply
4.9k
views
Comment:
C: Remove not polymorphic sites from VCF
3.4 years ago by
GabrielMontenegro
▴ 670
0
votes
1
reply
4.9k
views
Comment:
C: Remove not polymorphic sites from VCF
3.4 years ago by
GabrielMontenegro
▴ 670
0
votes
0
replies
4.9k
views
Comment:
C: Remove not polymorphic sites from VCF
3.4 years ago by
GabrielMontenegro
▴ 670
0
votes
1
reply
4.9k
views
Comment:
C: Remove not polymorphic sites from VCF
3.4 years ago by
GabrielMontenegro
▴ 670
0
votes
1
reply
4.9k
views
Comment:
C: Remove not polymorphic sites from VCF
3.4 years ago by
GabrielMontenegro
▴ 670
0
votes
1
reply
4.9k
views
Comment:
C: Remove not polymorphic sites from VCF
3.4 years ago by
GabrielMontenegro
▴ 670
0
votes
1
reply
2.2k
views
Comment:
C: Haplotype block in PLINK using r2 values
3.6 years ago by
GabrielMontenegro
▴ 670
0
votes
1
reply
2.2k
views
Comment:
C: Haplotype block in PLINK using r2 values
3.6 years ago by
GabrielMontenegro
▴ 670
0
votes
5
replies
2.2k
views
Haplotype block in PLINK using r2 values
plink
SNP
LD
haplotypes
3.6 years ago by
GabrielMontenegro
▴ 670
9
votes
13
replies
6.0k
views
Forcing A1/A2 alleles in PLINK in a VCF phased file
SNP
PLINK
VCF
updated 3.7 years ago by
diercles.cardoso
• 0 • written 4.8 years ago by
GabrielMontenegro
▴ 670
5
votes
2
replies
4.3k
views
Interpreting Ldhat Outputs
recombination
updated 3.8 years ago by
nineday.lzu
• 0 • written 8.4 years ago by
GabrielMontenegro
▴ 670
0
votes
0
replies
13k
views
Answer:
A: Visualize Effect Of Snp Variant On Protein Structure
updated 3.8 years ago by
Ram
36k • written 5.3 years ago by
GabrielMontenegro
▴ 670
0
votes
1
reply
1.5k
views
No output estimating LD between SNPs in VCF using PLINK
plink
vcf
updated 3.9 years ago by
Kevin Blighe
82k • written 3.9 years ago by
GabrielMontenegro
▴ 670
2
votes
1
reply
2.2k
views
Identifying mutations between haplotypes using haploNet (pegas) in R
R
pegas
haplotypes
phylogenetics
updated 4.0 years ago by
Jie Ping
▴ 30 • written 4.3 years ago by
GabrielMontenegro
▴ 670
0
votes
0
replies
17k
views
Comment:
C: LD-decay in a r2 vs distance(cm) plot
4.4 years ago by
GabrielMontenegro
▴ 670
0
votes
0
replies
2.6k
views
Answer:
A: tools for Population branch statistics (PBS)
4.4 years ago by
GabrielMontenegro
▴ 670
0
votes
0
replies
9.4k
views
Comment:
C: What is population branch statistic (PBS)?
4.4 years ago by
GabrielMontenegro
▴ 670
1
vote
1
reply
9.4k
views
Answer:
A: What is population branch statistic (PBS)?
4.4 years ago by
GabrielMontenegro
▴ 670
0
votes
1
reply
2.9k
views
Merging inconsistencies in PLINK
SNP
PLINK
updated 4.6 years ago by
Biostar
20 • written 4.8 years ago by
GabrielMontenegro
▴ 670
0
votes
3
replies
9.4k
views
Comment:
C: How to interpret XPEHH (recent selection) score?
4.7 years ago by
GabrielMontenegro
▴ 670
0
votes
1
reply
2.6k
views
Subsetting individuals in PLINK when IDs contain underscores "_"
plink
updated 4.8 years ago by
pfs
▴ 280 • written 4.8 years ago by
GabrielMontenegro
▴ 670
0
votes
1
reply
6.0k
views
Comment:
C: Forcing A1/A2 alleles in PLINK in a VCF phased file
4.8 years ago by
GabrielMontenegro
▴ 670
0
votes
1
reply
6.0k
views
Comment:
C: Forcing A1/A2 alleles in PLINK in a VCF phased file
4.8 years ago by
GabrielMontenegro
▴ 670
154 results • Page
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