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4
votes
9
replies
5.4k
views
9 follow
Converting ms or msms output to PLINK or VCF files
SNP genome sequence
updated 3.2 years ago by ▴ 50 • written 8.7 years ago by ▴ 680
0
votes
0
replies
6.0k
views
Comment: Comment: Calculating ethnicity of a sample VCF
3.5 years ago by GabrielMontenegro ▴ 680
0
votes
0
replies
4.3k
views
Answer: Answer: vcftools not ouputting log file when run from perl
3.7 years ago by GabrielMontenegro ▴ 680
2
votes
2
replies
2.1k
views
Interpretting phastConsElements from USCS Table Browser
phastcons conservation genomics ucsc
updated 2.7 years ago by 45k • written 4.1 years ago by ▴ 680
0
votes
3
replies
3.9k
views
Problems Using Ldhat Example Files
ld
updated 4.9 years ago by 20 • written 11.8 years ago by ▴ 680
0
votes
0
replies
1.5k
views
Comment: C: Placing random non-overlaping segments across genome [GenomicRanges]
5.3 years ago by GabrielMontenegro ▴ 680
0
votes
0
replies
6.2k
views
Comment: C: Generate random genomic positions with R
5.3 years ago by GabrielMontenegro ▴ 680
1
vote
2
replies
1.5k
views
Placing random non-overlaping segments across genome [GenomicRanges]
r genomicranges
5.3 years ago by GabrielMontenegro ▴ 680
0
votes
0
replies
797
views
Rounding error in allele frequency estimates in PLINK
SNP plink
5.4 years ago by GabrielMontenegro ▴ 680
0
votes
0
replies
2.8k
views
Comment: C: Get the longest transcript in GenomicRanges
5.4 years ago by GabrielMontenegro ▴ 680
0
votes
2
replies
2.8k
views
Comment: C: Get the longest transcript in GenomicRanges
5.4 years ago by GabrielMontenegro ▴ 680
0
votes
0
replies
2.8k
views
Comment: C: Get the longest transcript in GenomicRanges
5.4 years ago by GabrielMontenegro ▴ 680
0
votes
0
replies
2.8k
views
Comment: C: Get the longest transcript in GenomicRanges
5.4 years ago by GabrielMontenegro ▴ 680
2
votes
8
replies
2.8k
views
Get the longest transcript in GenomicRanges
ggbio r genomicranges
5.4 years ago by GabrielMontenegro ▴ 680
1
vote
3
replies
5.1k
views
SNP scoring using PLINK
plink SNP
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 680
0
votes
1
reply
6.5k
views
Comment: C: Gene plot similar to LocusZoom
updated 5.9 years ago by 45k • written 9.8 years ago by ▴ 680
15
votes
17
replies
12k
views
Remove not polymorphic sites from VCF
vcf genome
updated 3.7 years ago by ▴ 320 • written 6.8 years ago by ▴ 680
0
votes
1
reply
10k
views
Comment: C: Forcing A1/A2 alleles in PLINK in a VCF phased file
6.3 years ago by GabrielMontenegro ▴ 680
5
votes
1
reply
5.0k
views
Exclude sites on the basis of the proportion of missing data using BCFTOOLS
genome vcf vcftools bcftools
6.4 years ago by GabrielMontenegro ▴ 680
0
votes
0
replies
5.0k
views
Comment: C: Estimating LD score in PLINK
6.5 years ago by GabrielMontenegro ▴ 680
0
votes
1
reply
5.0k
views
Comment: C: Estimating LD score in PLINK
6.5 years ago by GabrielMontenegro ▴ 680
0
votes
4
replies
5.0k
views
Estimating LD score in PLINK
plink ld ldscore
updated 6.5 years ago by 45k • written 6.5 years ago by ▴ 680
0
votes
2
replies
4.7k
views
Single-Tissue eQTLs: P-value threshold in GTEX ??
snp RNA-Seq
updated 6.6 years ago by 89k • written 8.5 years ago by ▴ 680
0
votes
1
reply
12k
views
Comment: C: Remove not polymorphic sites from VCF
6.7 years ago by GabrielMontenegro ▴ 680
15
votes
5
replies
6.9k
views
Keep variants with 0% missing in VCF
vcf bcftools
updated 6.8 years ago by 89k • written 6.8 years ago by ▴ 680
2
votes
0
replies
2.3k
views
Comment: C: FATAL ERROR Exhausted system memory (PLINK 1.07)
6.8 years ago by GabrielMontenegro ▴ 680
1
vote
1
reply
4.3k
views
Comment: C: How to explain my QQ-plot result
6.8 years ago by GabrielMontenegro ▴ 680
0
votes
1
reply
12k
views
Comment: C: Remove not polymorphic sites from VCF
6.8 years ago by GabrielMontenegro ▴ 680
0
votes
1
reply
12k
views
Comment: C: Remove not polymorphic sites from VCF
6.8 years ago by GabrielMontenegro ▴ 680
0
votes
0
replies
12k
views
Comment: C: Remove not polymorphic sites from VCF
6.8 years ago by GabrielMontenegro ▴ 680
0
votes
1
reply
12k
views
Comment: C: Remove not polymorphic sites from VCF
6.8 years ago by GabrielMontenegro ▴ 680
0
votes
1
reply
12k
views
Comment: C: Remove not polymorphic sites from VCF
6.8 years ago by GabrielMontenegro ▴ 680
0
votes
1
reply
12k
views
Comment: C: Remove not polymorphic sites from VCF
6.8 years ago by GabrielMontenegro ▴ 680
0
votes
1
reply
3.7k
views
Comment: C: Haplotype block in PLINK using r2 values
6.9 years ago by GabrielMontenegro ▴ 680
0
votes
1
reply
3.7k
views
Comment: C: Haplotype block in PLINK using r2 values
6.9 years ago by GabrielMontenegro ▴ 680
0
votes
5
replies
3.7k
views
Haplotype block in PLINK using r2 values
plink SNP LD haplotypes
6.9 years ago by GabrielMontenegro ▴ 680
9
votes
13
replies
10k
views
Forcing A1/A2 alleles in PLINK in a VCF phased file
SNP PLINK VCF
updated 7.1 years ago by • 0 • written 8.2 years ago by ▴ 680
5
votes
2
replies
5.5k
views
Interpreting Ldhat Outputs
recombination
updated 7.1 years ago by • 0 • written 11.7 years ago by ▴ 680
0
votes
0
replies
17k
views
Answer: A: Visualize Effect Of Snp Variant On Protein Structure
updated 7.2 years ago by 45k • written 8.7 years ago by ▴ 680
0
votes
1
reply
2.2k
views
No output estimating LD between SNPs in VCF using PLINK
plink vcf
updated 7.2 years ago by 89k • written 7.2 years ago by ▴ 680
3
votes
2
replies
4.1k
views
Identifying mutations between haplotypes using haploNet (pegas) in R
R pegas haplotypes phylogenetics
updated 2.5 years ago by ▴ 40 • written 7.6 years ago by ▴ 680
0
votes
0
replies
30k
views
Comment: C: LD-decay in a r2 vs distance(cm) plot
7.7 years ago by GabrielMontenegro ▴ 680
0
votes
0
replies
3.7k
views
Answer: A: tools for Population branch statistics (PBS)
7.7 years ago by GabrielMontenegro ▴ 680
0
votes
0
replies
17k
views
Comment: C: What is population branch statistic (PBS)?
7.7 years ago by GabrielMontenegro ▴ 680
1
vote
1
reply
17k
views
Answer: A: What is population branch statistic (PBS)?
7.7 years ago by GabrielMontenegro ▴ 680
0
votes
1
reply
3.8k
views
Merging inconsistencies in PLINK
SNP PLINK
updated 8.0 years ago by 20 • written 8.2 years ago by ▴ 680
0
votes
3
replies
13k
views
Comment: C: How to interpret XPEHH (recent selection) score?
8.0 years ago by GabrielMontenegro ▴ 680
0
votes
1
reply
4.3k
views
Subsetting individuals in PLINK when IDs contain underscores "_"
plink
updated 8.1 years ago by ▴ 280 • written 8.1 years ago by ▴ 680
0
votes
1
reply
10k
views
Comment: C: Forcing A1/A2 alleles in PLINK in a VCF phased file
8.1 years ago by GabrielMontenegro ▴ 680
0
votes
1
reply
10k
views
Comment: C: Forcing A1/A2 alleles in PLINK in a VCF phased file
8.2 years ago by GabrielMontenegro ▴ 680
154 results • Page 1 of 4
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