Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
3
votes
4
replies
642
views
replicate SyRi/plotsr output plot in R
R
SyRi
synteny
9 days ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
642
views
Answer:
Answer: replicate SyRi/plotsr output plot in R
9 days ago by
Matteo Ungaro
▴ 130
1
vote
1
reply
553
views
combine VCF from diploid reference/haplotypes for the same sample
bcftools
combine
VCF
updated 28 days ago by
cmdcolin
★ 4.4k • written 4 weeks ago by
Matteo Ungaro
▴ 130
0
votes
1
reply
3.7k
views
Comment:
Comment: best practice for diploid variant calling
9 weeks ago by
Matteo Ungaro
▴ 130
1
vote
3
replies
3.7k
views
best practice for diploid variant calling
variant-calling
haplotype
samtools
diploid
bcftools
updated 9 weeks ago by
cmdcolin
★ 4.4k • written 9 weeks ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
751
views
Answer:
Answer: how to extract centromeric regions from assemblies/FASTA
3 months ago by
Matteo Ungaro
▴ 130
0
votes
1
reply
751
views
Comment:
Comment: how to extract centromeric regions from assemblies/FASTA
3 months ago by
Matteo Ungaro
▴ 130
2
votes
4
replies
751
views
how to extract centromeric regions from human assemblies/FASTA
centromeres
FASTA
updated 3 months ago by
colindaven
8.1k • written 3 months ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
708
views
Comment:
Comment: how to produce your own Nx plot
3 months ago by
Matteo Ungaro
▴ 130
1
vote
2
replies
708
views
how to produce your own Nx plot
R
contiguity
plot
Nx
3 months ago by
Matteo Ungaro
▴ 130
2
votes
3
replies
1.0k
views
pysam header and body
bam
pysam
view
updated 5 months ago by
dariober
15k • written 5 months ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
1.0k
views
Comment:
Comment: pysam header and body
5 months ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
987
views
Comment:
Comment: advice on rooting a tree in R
8 months ago by
Matteo Ungaro
▴ 130
2
votes
2
replies
987
views
advice on rooting a tree in R
R
tree
ggtree
phylo
8 months ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
656
views
Comment:
Comment: plot PLINK2.0 output with ggtree
8 months ago by
Matteo Ungaro
▴ 130
0
votes
1
reply
656
views
plot PLINK2.0 output with ggtree
ibs
matrix
plink
ggtree
8 months ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
446
views
simulate a genome with specific event
simulation
genome
retrocopy
8 months ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
1.4k
views
Comment:
Comment: determine softmask regions from FASTA
9 months ago by
Matteo Ungaro
▴ 130
0
votes
2
replies
1.4k
views
Comment:
Comment: determine softmask regions from FASTA
9 months ago by
Matteo Ungaro
▴ 130
2
votes
6
replies
1.4k
views
determine softmask regions from FASTA
BED
FASTA
softmask
updated 9 months ago by
lieven.sterck
16k • written 9 months ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
1.8k
views
Comment:
Comment: how to effectively pipe chromap into samtools view
15 months ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
1.8k
views
Comment:
Comment: how to effectively pipe chromap into samtools view
15 months ago by
Matteo Ungaro
▴ 130
0
votes
2
replies
1.8k
views
Comment:
Comment: how to effectively pipe chromap into samtools view
15 months ago by
Matteo Ungaro
▴ 130
3
votes
6
replies
1.8k
views
how to effectively pipe chromap into samtools view
samtools
bash
pipe
15 months ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
1.0k
views
Comment:
Comment: trailing paired-end slashes (/) in BAM file
15 months ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
1.0k
views
Comment:
Comment: trailing paired-end slashes (/) in BAM file
15 months ago by
Matteo Ungaro
▴ 130
1
vote
4
replies
1.0k
views
trailing paired-end slashes (/) in BAM file
awk
BAM
sed
updated 15 months ago by
Ram
45k • written 15 months ago by
Matteo Ungaro
▴ 130
0
votes
1
reply
988
views
Comment:
Comment: picard – scatter intervals by n uses
16 months ago by
Matteo Ungaro
▴ 130
3
votes
3
replies
988
views
picard – scatter intervals by n uses
bedtools
intervals
picard
bed
updated 16 months ago by
Pierre Lindenbaum
166k • written 16 months ago by
Matteo Ungaro
▴ 130
0
votes
1
reply
2.1k
views
Comment:
Comment: joint callset and vcf sorting, unknown TAG issue
updated 18 months ago by
Pierre Lindenbaum
166k • written 18 months ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
2.1k
views
Comment:
Comment: joint callset and vcf sorting, unknown TAG issue
18 months ago by
Matteo Ungaro
▴ 130
2
votes
8
replies
2.1k
views
joint callset and vcf sorting, unknown TAG issue
sort
bcftools
GLNexus
merge
VCF
updated 18 months ago by
Pierre Lindenbaum
166k • written 18 months ago by
Matteo Ungaro
▴ 130
0
votes
1
reply
2.1k
views
Comment:
Comment: joint callset and vcf sorting, unknown TAG issue
18 months ago by
Matteo Ungaro
▴ 130
0
votes
1
reply
2.1k
views
Comment:
Comment: joint callset and vcf sorting, unknown TAG issue
18 months ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
903
views
Comment:
Comment: bam merging for archaic samples
18 months ago by
Matteo Ungaro
▴ 130
0
votes
2
replies
903
views
bam merging for archaic samples
samtools
bam
updated 18 months ago by
Ram
45k • written 18 months ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
1.2k
views
Comment:
Comment: filtering VCF sites and impose whatever excluded ad missing
19 months ago by
Matteo Ungaro
▴ 130
0
votes
2
replies
1.2k
views
Comment:
Comment: filtering VCF sites and impose whatever excluded ad missing
19 months ago by
Matteo Ungaro
▴ 130
2
votes
4
replies
1.2k
views
filtering VCF sites and impose whatever excluded ad missing
conditions
vcf
filters
bcftools
19 months ago by
Matteo Ungaro
▴ 130
5
votes
4
replies
2.1k
views
change order of violin plots in ggplot2
R
ggplot2
violin-plots
updated 20 months ago by
Ram
45k • written 20 months ago by
Matteo Ungaro
▴ 130
3
votes
0
replies
2.1k
views
Answer:
Answer: change order of violin plots in ggplot2
updated 20 months ago by
Ram
45k • written 20 months ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
2.1k
views
Comment:
Comment: change order of violin plots in ggplot2
20 months ago by
Matteo Ungaro
▴ 130
0
votes
1
reply
2.1k
views
Comment:
Comment: change order of violin plots in ggplot2
20 months ago by
Matteo Ungaro
▴ 130
0
votes
1
reply
1.7k
views
Comment:
Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
21 months ago by
Matteo Ungaro
▴ 130
0
votes
5
replies
1.7k
views
PCA from plink2 for SGDP using a pangenome and DeepVariant
umap
DeepVariant
pangenome
plink2
pca
updated 21 months ago by
DBScan
▴ 530 • written 21 months ago by
Matteo Ungaro
▴ 130
0
votes
1
reply
1.7k
views
Comment:
Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
21 months ago by
Matteo Ungaro
▴ 130
1
vote
0
replies
2.4k
views
Comment:
Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
2.0 years ago by
Matteo Ungaro
▴ 130
1
vote
1
reply
2.4k
views
Comment:
Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
2.0 years ago by
Matteo Ungaro
▴ 130
0
votes
1
reply
2.4k
views
Comment:
Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
2.0 years ago by
Matteo Ungaro
▴ 130
8
votes
6
replies
2.4k
views
How to create a Venn Diagram for overlapping SVs from a merged VCF
truvari
structural-variants
r
vcf
venn-diagram
2.0 years ago by
Matteo Ungaro
▴ 130
74 results • Page
1 of 2
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6