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513
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Comment: Comment: advice on rooting a tree in R
10 weeks ago by Matteo Ungaro ▴ 120
2
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2
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513
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advice on rooting a tree in R
R tree ggtree phylo
10 weeks ago by Matteo Ungaro ▴ 120
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308
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Comment: Comment: plot PLINK2.0 output with ggtree
11 weeks ago by Matteo Ungaro ▴ 120
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1
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308
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plot PLINK2.0 output with ggtree
ibs matrix plink ggtree
11 weeks ago by Matteo Ungaro ▴ 120
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232
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simulate a genome with specific event
simulation genome retrocopy
12 weeks ago by Matteo Ungaro ▴ 120
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707
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Comment: Comment: determine softmask regions from FASTA
4 months ago by Matteo Ungaro ▴ 120
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2
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707
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Comment: Comment: determine softmask regions from FASTA
4 months ago by Matteo Ungaro ▴ 120
2
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6
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707
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determine softmask regions from FASTA
BED FASTA softmask
updated 4 months ago by 15k • written 4 months ago by ▴ 120
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1.2k
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Comment: Comment: how to effectively pipe chromap into samtools view
9 months ago by Matteo Ungaro ▴ 120
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1.2k
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Comment: Comment: how to effectively pipe chromap into samtools view
9 months ago by Matteo Ungaro ▴ 120
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2
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1.2k
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Comment: Comment: how to effectively pipe chromap into samtools view
9 months ago by Matteo Ungaro ▴ 120
3
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6
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1.2k
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how to effectively pipe chromap into samtools view
samtools bash pipe
9 months ago by Matteo Ungaro ▴ 120
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647
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Comment: Comment: trailing paired-end slashes (/) in BAM file
9 months ago by Matteo Ungaro ▴ 120
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0
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647
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Comment: Comment: trailing paired-end slashes (/) in BAM file
9 months ago by Matteo Ungaro ▴ 120
1
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4
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647
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trailing paired-end slashes (/) in BAM file
awk BAM sed
updated 9 months ago by 45k • written 9 months ago by ▴ 120
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1
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650
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Comment: Comment: picard – scatter intervals by n uses
11 months ago by Matteo Ungaro ▴ 120
3
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3
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650
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picard – scatter intervals by n uses
bedtools intervals picard bed
updated 11 months ago by 166k • written 11 months ago by ▴ 120
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1.4k
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Comment: Comment: joint callset and vcf sorting, unknown TAG issue
updated 12 months ago by 166k • written 12 months ago by ▴ 120
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1.4k
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Comment: Comment: joint callset and vcf sorting, unknown TAG issue
12 months ago by Matteo Ungaro ▴ 120
2
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8
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1.4k
views
joint callset and vcf sorting, unknown TAG issue
sort bcftools GLNexus merge VCF
updated 12 months ago by 166k • written 12 months ago by ▴ 120
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1
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1.4k
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Comment: Comment: joint callset and vcf sorting, unknown TAG issue
12 months ago by Matteo Ungaro ▴ 120
0
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1
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1.4k
views
Comment: Comment: joint callset and vcf sorting, unknown TAG issue
12 months ago by Matteo Ungaro ▴ 120
0
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0
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647
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Comment: Comment: bam merging for archaic samples
13 months ago by Matteo Ungaro ▴ 120
0
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2
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647
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bam merging for archaic samples
samtools bam
updated 13 months ago by 45k • written 13 months ago by ▴ 120
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747
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Comment: Comment: filtering VCF sites and impose whatever excluded ad missing
13 months ago by Matteo Ungaro ▴ 120
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2
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747
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Comment: Comment: filtering VCF sites and impose whatever excluded ad missing
13 months ago by Matteo Ungaro ▴ 120
2
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4
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747
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filtering VCF sites and impose whatever excluded ad missing
conditions vcf filters bcftools
13 months ago by Matteo Ungaro ▴ 120
5
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4
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1.5k
views
change order of violin plots in ggplot2
R ggplot2 violin-plots
updated 14 months ago by 45k • written 14 months ago by ▴ 120
3
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0
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1.5k
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Answer: Answer: change order of violin plots in ggplot2
updated 14 months ago by 45k • written 14 months ago by ▴ 120
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0
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1.5k
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Comment: Comment: change order of violin plots in ggplot2
14 months ago by Matteo Ungaro ▴ 120
0
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1
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1.5k
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Comment: Comment: change order of violin plots in ggplot2
14 months ago by Matteo Ungaro ▴ 120
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1
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1.2k
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
15 months ago by Matteo Ungaro ▴ 120
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5
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1.2k
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PCA from plink2 for SGDP using a pangenome and DeepVariant
umap DeepVariant pangenome plink2 pca
updated 15 months ago by ▴ 480 • written 15 months ago by ▴ 120
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1
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1.2k
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
15 months ago by Matteo Ungaro ▴ 120
1
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0
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1.8k
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Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
18 months ago by Matteo Ungaro ▴ 120
1
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1
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1.8k
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Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
18 months ago by Matteo Ungaro ▴ 120
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1
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1.8k
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Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
18 months ago by Matteo Ungaro ▴ 120
8
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6
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1.8k
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How to create a Venn Diagram for overlapping SVs from a merged VCF
truvari structural-variants r vcf venn-diagram
18 months ago by Matteo Ungaro ▴ 120
0
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0
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497
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Determine INDELs number (both classes separately) from reference and graph-based VCF files
INDEL vcf
updated 19 months ago by 45k • written 19 months ago by ▴ 120
1
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0
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682
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Merged CRAM output
warning samtools CRAM merging
23 months ago by Matteo Ungaro ▴ 120
8
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4
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2.3k
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Merging CRAM files
samtools CRAM
updated 23 months ago by ★ 1.3k • written 23 months ago by ▴ 120
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1
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2.3k
views
Comment: Comment: Merging CRAM files
23 months ago by Matteo Ungaro ▴ 120
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0
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1.8k
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Comment: Comment: Edit and re-head BAM file
2.0 years ago by Matteo Ungaro ▴ 120
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0
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1.8k
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Comment: Comment: Edit and re-head BAM file
2.0 years ago by Matteo Ungaro ▴ 120
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1
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1.8k
views
Comment: Comment: Edit and re-head BAM file
2.0 years ago by Matteo Ungaro ▴ 120
3
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6
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1.8k
views
Edit and re-head BAM file
samtools BAM
updated 23 months ago by 45k • written 2.0 years ago by ▴ 120
2
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2
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978
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filter VCF based on FORMAT
vcf bcftools
updated 23 months ago by 45k • written 2.2 years ago by ▴ 120
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1
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906
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Comment: Comment: formatting VCF file for analyses
2.7 years ago by Matteo Ungaro ▴ 120
3
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3
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906
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formatting VCF file for analyses
VCF awk
updated 23 months ago by 45k • written 2.7 years ago by ▴ 120
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0
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474
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Chromosome Path in Pairtools
Pairtools
updated 23 months ago by 45k • written 3.2 years ago by ▴ 120
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