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3
votes
4
replies
656
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replicate SyRi/plotsr output plot in R
R SyRi synteny
9 days ago by Matteo Ungaro ▴ 130
0
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0
replies
656
views
Answer: Answer: replicate SyRi/plotsr output plot in R
9 days ago by Matteo Ungaro ▴ 130
1
vote
1
reply
555
views
combine VCF from diploid reference/haplotypes for the same sample
bcftools combine VCF
updated 29 days ago by ★ 4.4k • written 4 weeks ago by ▴ 130
0
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1
reply
3.7k
views
Comment: Comment: best practice for diploid variant calling
9 weeks ago by Matteo Ungaro ▴ 130
1
vote
3
replies
3.7k
views
best practice for diploid variant calling
variant-calling haplotype samtools diploid bcftools
updated 9 weeks ago by ★ 4.4k • written 10 weeks ago by ▴ 130
0
votes
0
replies
758
views
Answer: Answer: how to extract centromeric regions from assemblies/FASTA
3 months ago by Matteo Ungaro ▴ 130
0
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1
reply
758
views
Comment: Comment: how to extract centromeric regions from assemblies/FASTA
3 months ago by Matteo Ungaro ▴ 130
2
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4
replies
758
views
how to extract centromeric regions from human assemblies/FASTA
centromeres FASTA
updated 3 months ago by 8.1k • written 3 months ago by ▴ 130
0
votes
0
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713
views
Comment: Comment: how to produce your own Nx plot
3 months ago by Matteo Ungaro ▴ 130
1
vote
2
replies
713
views
how to produce your own Nx plot
R contiguity plot Nx
3 months ago by Matteo Ungaro ▴ 130
2
votes
3
replies
1.0k
views
pysam header and body
bam pysam view
updated 5 months ago by 15k • written 5 months ago by ▴ 130
0
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0
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1.0k
views
Comment: Comment: pysam header and body
5 months ago by Matteo Ungaro ▴ 130
0
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0
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997
views
Comment: Comment: advice on rooting a tree in R
8 months ago by Matteo Ungaro ▴ 130
2
votes
2
replies
997
views
advice on rooting a tree in R
R tree ggtree phylo
8 months ago by Matteo Ungaro ▴ 130
0
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0
replies
667
views
Comment: Comment: plot PLINK2.0 output with ggtree
8 months ago by Matteo Ungaro ▴ 130
0
votes
1
reply
667
views
plot PLINK2.0 output with ggtree
ibs matrix plink ggtree
8 months ago by Matteo Ungaro ▴ 130
0
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0
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447
views
simulate a genome with specific event
simulation genome retrocopy
8 months ago by Matteo Ungaro ▴ 130
0
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0
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1.4k
views
Comment: Comment: determine softmask regions from FASTA
9 months ago by Matteo Ungaro ▴ 130
0
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2
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1.4k
views
Comment: Comment: determine softmask regions from FASTA
9 months ago by Matteo Ungaro ▴ 130
2
votes
6
replies
1.4k
views
determine softmask regions from FASTA
BED FASTA softmask
updated 9 months ago by 16k • written 9 months ago by ▴ 130
0
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0
replies
1.8k
views
Comment: Comment: how to effectively pipe chromap into samtools view
15 months ago by Matteo Ungaro ▴ 130
0
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0
replies
1.8k
views
Comment: Comment: how to effectively pipe chromap into samtools view
15 months ago by Matteo Ungaro ▴ 130
0
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2
replies
1.8k
views
Comment: Comment: how to effectively pipe chromap into samtools view
15 months ago by Matteo Ungaro ▴ 130
3
votes
6
replies
1.8k
views
how to effectively pipe chromap into samtools view
samtools bash pipe
15 months ago by Matteo Ungaro ▴ 130
0
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0
replies
1.0k
views
Comment: Comment: trailing paired-end slashes (/) in BAM file
15 months ago by Matteo Ungaro ▴ 130
0
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0
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1.0k
views
Comment: Comment: trailing paired-end slashes (/) in BAM file
15 months ago by Matteo Ungaro ▴ 130
1
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4
replies
1.0k
views
trailing paired-end slashes (/) in BAM file
awk BAM sed
updated 15 months ago by 45k • written 15 months ago by ▴ 130
0
votes
1
reply
990
views
Comment: Comment: picard – scatter intervals by n uses
17 months ago by Matteo Ungaro ▴ 130
3
votes
3
replies
990
views
picard – scatter intervals by n uses
bedtools intervals picard bed
updated 17 months ago by 166k • written 17 months ago by ▴ 130
0
votes
1
reply
2.1k
views
Comment: Comment: joint callset and vcf sorting, unknown TAG issue
updated 18 months ago by 166k • written 18 months ago by ▴ 130
0
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0
replies
2.1k
views
Comment: Comment: joint callset and vcf sorting, unknown TAG issue
18 months ago by Matteo Ungaro ▴ 130
2
votes
8
replies
2.1k
views
joint callset and vcf sorting, unknown TAG issue
sort bcftools GLNexus merge VCF
updated 18 months ago by 166k • written 18 months ago by ▴ 130
0
votes
1
reply
2.1k
views
Comment: Comment: joint callset and vcf sorting, unknown TAG issue
18 months ago by Matteo Ungaro ▴ 130
0
votes
1
reply
2.1k
views
Comment: Comment: joint callset and vcf sorting, unknown TAG issue
18 months ago by Matteo Ungaro ▴ 130
0
votes
0
replies
909
views
Comment: Comment: bam merging for archaic samples
18 months ago by Matteo Ungaro ▴ 130
0
votes
2
replies
909
views
bam merging for archaic samples
samtools bam
updated 18 months ago by 45k • written 18 months ago by ▴ 130
0
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0
replies
1.2k
views
Comment: Comment: filtering VCF sites and impose whatever excluded ad missing
19 months ago by Matteo Ungaro ▴ 130
0
votes
2
replies
1.2k
views
Comment: Comment: filtering VCF sites and impose whatever excluded ad missing
19 months ago by Matteo Ungaro ▴ 130
2
votes
4
replies
1.2k
views
filtering VCF sites and impose whatever excluded ad missing
conditions vcf filters bcftools
19 months ago by Matteo Ungaro ▴ 130
5
votes
4
replies
2.1k
views
change order of violin plots in ggplot2
R ggplot2 violin-plots
updated 20 months ago by 45k • written 20 months ago by ▴ 130
3
votes
0
replies
2.1k
views
Answer: Answer: change order of violin plots in ggplot2
updated 20 months ago by 45k • written 20 months ago by ▴ 130
0
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0
replies
2.1k
views
Comment: Comment: change order of violin plots in ggplot2
20 months ago by Matteo Ungaro ▴ 130
0
votes
1
reply
2.1k
views
Comment: Comment: change order of violin plots in ggplot2
20 months ago by Matteo Ungaro ▴ 130
0
votes
1
reply
1.7k
views
Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
21 months ago by Matteo Ungaro ▴ 130
0
votes
5
replies
1.7k
views
PCA from plink2 for SGDP using a pangenome and DeepVariant
umap DeepVariant pangenome plink2 pca
updated 21 months ago by ▴ 530 • written 21 months ago by ▴ 130
0
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1
reply
1.7k
views
Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
21 months ago by Matteo Ungaro ▴ 130
1
vote
0
replies
2.4k
views
Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
2.0 years ago by Matteo Ungaro ▴ 130
1
vote
1
reply
2.4k
views
Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
2.0 years ago by Matteo Ungaro ▴ 130
0
votes
1
reply
2.4k
views
Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
2.0 years ago by Matteo Ungaro ▴ 130
8
votes
6
replies
2.4k
views
How to create a Venn Diagram for overlapping SVs from a merged VCF
truvari structural-variants r vcf venn-diagram
2.0 years ago by Matteo Ungaro ▴ 130
74 results • Page 1 of 2
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