I'm currently perfoming my master final project and I am analysing RNA-seq data of breast cancer. I need to find groups in the data, and after using different clustering methods, I would like to try PAM50 method.
I found many papers which spoke about PAM50, and "genefu" package information, but I don't find any protocol where it is explained how to perform a PAM50 study.
If someone knows where I could find it, please let me know it.
Thank you so much,