News:1000 Genomes : The Initial Phase 3 variant list and phased genotypes.

Question

[Pierre Lindenbaum]

The Initial Phase 3 variant list and phased genotypes. http://t.co/I9h7CGzxmL

— The 1000 Genomes (@1000genomes) June 24, 2014

The initial call set from the 1000 Genomes Project Phase 3 analysis is now available on (the) ftp site in the directory ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/

These release contains more than 79 million variant sites and includes not just biallelic snps but also indels, deletions, complex short substitutions and other structural variant classes. It is based on data from 2535 individuals from 26 different populations around the world.

[Giovanni M Dall'Olio]

oh no, now I will have to repeat all the analysis again ;-)

[brentp]

"you just have to press a button or run a script, right?"

[Alastair Kerr]

Thanks Pierre. Is there any detailed information available on the workflows that were used to generate this data?

[Emily]

There's more info in the README.

[Alastair Kerr]

saw that thanks Emily, but quite general and not enough to reconstruct from raw data

[Emily]

There will be a proper paper out at some point with all the nitty gritty.

[Alastair Kerr]

Looking forward to it. Will you be using a preprint server?

[Emily]

No idea, I'm afraid.

[Pierre Lindenbaum]

I dunno