News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
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gravatar for Pierre Lindenbaum
5.5 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum124k wrote:

https://twitter.com/1000genomes/status/481395555646853121

The initial call set from the 1000 Genomes Project Phase 3 analysis is now available on (the) ftp site in the directory ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/
These release contains more than 79 million variant sites and includes not just biallelic snps but also indels, deletions, complex short substitutions and other structural variant classes. It is based on data from 2535 individuals from 26 different populations around the world.

news 1000genomes • 2.5k views
ADD COMMENTlink modified 5.5 years ago • written 5.5 years ago by Pierre Lindenbaum124k
1

oh no, now I will have to repeat all the analysis again ;-)

ADD REPLYlink written 5.5 years ago by Giovanni M Dall'Olio26k
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"you just have to press a button or run a script, right?"

ADD REPLYlink written 5.5 years ago by brentp23k

Thanks Pierre.  Is there any detailed information available on the workflows that were used to generate this data?

ADD REPLYlink written 5.5 years ago by Alastair Kerr5.2k
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There's more info in the README.

ADD REPLYlink written 5.5 years ago by Emily_Ensembl20k

saw that thanks Emily,  but quite general and not enough to reconstruct  from  raw data

ADD REPLYlink written 5.5 years ago by Alastair Kerr5.2k

There will be a proper paper out at some point with all the nitty gritty.

ADD REPLYlink written 5.5 years ago by Emily_Ensembl20k

Looking forward to it. Will you be using a  preprint server?

ADD REPLYlink written 5.5 years ago by Alastair Kerr5.2k

No idea, I'm afraid.

ADD REPLYlink written 5.5 years ago by Emily_Ensembl20k

I     dunno

ADD REPLYlink written 5.5 years ago by Pierre Lindenbaum124k
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