Question: Pathway Analysis for online portal
0
gravatar for pixie@bioinfo
4.7 years ago by
pixie@bioinfo1.3k
pixie@bioinfo1.3k wrote:

We are building a portal (website) which will be having pathway analysis as a part of the downstream analysis. Input will be list of genes/proteins/metabolites along with some values that will indicate their abundance in some way. Finally we want to highlight the pathways according to the color coding based on the range of values submitted. Which resource can allow us to incorporate these features in our portal? Any suggestion is greatly appreciated.

 

pathway • 1.2k views
ADD COMMENTlink modified 4.7 years ago • written 4.7 years ago by pixie@bioinfo1.3k
0
gravatar for Neilfws
4.7 years ago by
Neilfws48k
Sydney, Australia
Neilfws48k wrote:

This sounds a lot like the R/Bioconductor package pathview. If by portal you mean "website", one way to make R tools available is Shiny.

ADD COMMENTlink written 4.7 years ago by Neilfws48k

Thank you, I will look into it

ADD REPLYlink written 4.7 years ago by pixie@bioinfo1.3k

I have seen some softwares using BioPAX, do you have any idea if it can be incorporated in a website ?

ADD REPLYlink written 4.7 years ago by pixie@bioinfo1.3k
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