I wish to find out all interactions WITHIN a set of around 200 HUMAN proteins. The identifiers I can use are genename, Uniprotaccession and Uniprot_Ids. So far I tried two plugins viz. MIMI and APID2NET.
MIMI doesn't seem to accept 200 proteins in one go, so I've to merge the networks. APID2NET shows too many nodes without any interactions. The STRING DB shows quite a many interactions for which MIMI/APID2NET don't report anything.
I tried the STRING plugin too, but it looks like it can accept one ID at a time. Am I missing something here?
Can somebody recommend some good and hassle less plugins/tricks to import PPIs. I've to do subsequently a BINGO analysis.
Thanks in advance