Hello Every one !!
Happy New year to one and all!!
Could you please point me to some good tutorials/link/article/blog for Mt DNA haplogroup analysis ?
You could find our resource mit-o-matic http://genome.igib.res.in/mitomatic/ which can handle NGS datasets for Haplogroup analysis
If you attempt to haplotype your sequences through Mitomaster, please use the web service:
For a local run you might want to look at Phy-mer:
I have sequenced the human Mt genome from off target exome sequencing reads using the method of:
Picardi E, Pesole G. Mitochondrial genomes gleaned from human whole-exome sequencing. Nat Methods. 2012;9(6):523-4.
I then used the resulting consensus Mt DNA sequence (in fasta format) to determine the haplogroup using a local installation of Mitotool:
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