I have downloaded all the chromosome of Bos taurus and I have changed them in blast format using makeblastdb..and now I want to locally blast my sequence against these all chromosomes. now I have 29 databases. Is there any method by which I am able to blast my sequence against all 29 databases in my program.
What should I write in database????
@params = ('database' => '????????', 'outfile' => 'blast2.out', '_READMETHOD' => 'Blast', 'prog'=> 'blastn');
Thanks Manju Rawat
This is kind of an old topic, nevertheless my question is highly related to this topic. As you may well know, ncbi gives the taxdb files along with its nr, nt, 16s, its and 18s databases. These files aren't text files (extensions: .bti and .btd), thus I can't just cat them and merge them together. Is there any way to using multiple of these databases along with the associated taxdb files? I couldn't find a particular way to incorporate them. Any help would be appreciated.
taxdb files are common for all databases. Does that address your question?
Thank you for the answer, I actually found this out right after writing the question here. I coudn't see where the "remove the comment" option was, or at the very least I should have edited it as solved. Again, thank you.