Question: Illumina 450K array manifest for hg38?
7
gravatar for rmccloskey
6.0 years ago by
rmccloskey220
Canada
rmccloskey220 wrote:

I'm looking to map the results of some methylation experiments, performed with the Illumina 450K array, to hg38. I know there is a manifest on Illumina's website as well as in UCSC, but those are for hg19. Is there a source for the locations of the CpG probes on hg19, or should I just liftOver from the hg38 versions?

methylation hg38 illumina 450k • 3.7k views
ADD COMMENTlink modified 4 months ago by Kevin Blighe69k • written 6.0 years ago by rmccloskey220

I wanderer if you have any success with your question ??

ADD REPLYlink written 4.7 years ago by Tanvir Ahamed 290

So did you get any success. Even today I am struggling to find hg38 CpG probes.

ADD REPLYlink written 2.9 years ago by noorpratap.singh300
0
gravatar for Kevin Blighe
4 months ago by
Kevin Blighe69k
Republic of Ireland
Kevin Blighe69k wrote:

Not checked but a 'lifted over' version seems to be available here: https://zwdzwd.github.io/InfiniumAnnotation

Kevin

ADD COMMENTlink written 4 months ago by Kevin Blighe69k
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