Illumina 450K array manifest for hg38?
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7.3 years ago
rmccloskey ▴ 230

I'm looking to map the results of some methylation experiments, performed with the Illumina 450K array, to hg38. I know there is a manifest on Illumina's website as well as in UCSC, but those are for hg19. Is there a source for the locations of the CpG probes on hg19, or should I just liftOver from the hg38 versions?

hg38 illumina 450k methylation • 5.2k views
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I wanderer if you have any success with your question ??

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So did you get any success. Even today I am struggling to find hg38 CpG probes.

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21 months ago

Not checked but a 'lifted over' version seems to be available here: https://zwdzwd.github.io/InfiniumAnnotation

Kevin

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