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Question: Functional enrichment tool
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gravatar for morteza.kouhsar
4.0 years ago by
morteza.kouhsar • 0
morteza.kouhsar • 0 wrote:

I have about 260 files containing gene lists from Fly, Human and Yeast. I want to analyze each gene list based on GO structure and calculate the P-value of them. I tried to use GOTermFinder and David tools, but these tools can not identify some genes. The  GeneCoDis works very good, but it can't take multi-set files as input. Is there any other tools to calculate P-value of a gene list?
go functional enrichment p-value • 1.4k views
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modified 2.9 years ago by Woa • 2.7k • written 4.0 years ago by morteza.kouhsar • 0
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gravatar for Guangchuang Yu
2.9 years ago by
Guangchuang Yu • 2.1k
China/Hong Kong/The University of Hong Kong
Guangchuang Yu • 2.1k wrote:

https://guangchuangyu.github.io/clusterProfiler is a good choice.
ADD COMMENT • link modified 2.8 years ago • written 2.9 years ago by Guangchuang Yu • 2.1k
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gravatar for EagleEye
2.9 years ago by
EagleEye ♦ 6.2k
Sweden
EagleEye ♦ 6.2k wrote:

GeneSCF command line Tool (Real-time Enrichment analysis) - you can use FOR loop for multiple files.

http://genescf.kandurilab.org/

Discussions

https://www.biostars.org/local/search/page/?q=genescf
ADD COMMENT • link modified 2.9 years ago • written 2.9 years ago by EagleEye ♦ 6.2k

test fbsfbfb bb fdbdfbsdf reg erg

ADD REPLY • link written 2.9 years ago by lovedohurt • 0
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gravatar for Woa
2.9 years ago by
Woa • 2.7k
United States
Woa • 2.7k wrote:

http://amp.pharm.mssm.edu/Enrichr/
ADD COMMENT • link written 2.9 years ago by Woa • 2.7k
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