Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Question: Functional enrichment tool
0
gravatar for morteza.kouhsar
5.9 years ago by
morteza.kouhsar • 0
morteza.kouhsar • 0 wrote:

I have about 260 files containing gene lists from Fly, Human and Yeast. I want to analyze each gene list based on GO structure and calculate the P-value of them. I tried to use GOTermFinder and David tools, but these tools can not identify some genes. The  GeneCoDis works very good, but it can't take multi-set files as input. Is there any other tools to calculate P-value of a gene list?
go functional enrichment p-value • 1.8k views
ADD COMMENT • link •
modified 4.7 years ago by Woa • 2.8k • written 5.9 years ago by morteza.kouhsar • 0
2
gravatar for Guangchuang Yu
4.7 years ago by
Guangchuang Yu • 2.4k
China/Guangzhou/Southern Medical University
Guangchuang Yu • 2.4k wrote:

https://guangchuangyu.github.io/clusterProfiler is a good choice.
ADD COMMENT • link modified 4.7 years ago • written 4.7 years ago by Guangchuang Yu • 2.4k
0
gravatar for EagleEye
4.7 years ago by
EagleEye ♦ 6.8k
Sweden
EagleEye ♦ 6.8k wrote:

GeneSCF command line Tool (Real-time Enrichment analysis) - you can use FOR loop for multiple files.

http://genescf.kandurilab.org/

Discussions

https://www.biostars.org/local/search/page/?q=genescf
ADD COMMENT • link modified 4.7 years ago • written 4.7 years ago by EagleEye ♦ 6.8k

test fbsfbfb bb fdbdfbsdf reg erg

ADD REPLY • link written 4.7 years ago by lovedohurt • 0
0
gravatar for Woa
4.7 years ago by
Woa • 2.8k
United States
Woa • 2.8k wrote:

http://amp.pharm.mssm.edu/Enrichr/
ADD COMMENT • link written 4.7 years ago by Woa • 2.8k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1984 users visited in the last hour
_