Question: How can I remove sequences with only gaps (-) from a multi-fasta file?
1
gravatar for jon.brate
2.8 years ago by
jon.brate150
Norway
jon.brate150 wrote:

I have many files with single gene alignments in fasta fomat and many sequences in these consist of gaps only. How should I approach to remove these?

Thanks, Jon

unix trimming fasta • 1.5k views
ADD COMMENTlink modified 2.8 years ago by Ram13k • written 2.8 years ago by jon.brate150
0
gravatar for Ram
2.8 years ago by
Ram13k
New York
Ram13k wrote:

Try bioawk. You can use awk-like filtering to achieve your goal.

ADD COMMENTlink written 2.8 years ago by Ram13k
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