UTR visualization of CLIP seq data
1
0
Entering edit mode
6.0 years ago
kanwarjag ★ 1.1k

How I can visualize utr regions as well as promoter regions, exons and introns  in one browser?

utr browser visulaization • 1.6k views
ADD COMMENT
0
Entering edit mode
5.9 years ago

I am not sure what exactly you mean, but thats what a genome browser is implementing by default. Like in UCSC genome bowser, if you look at the guide

Gene prediction tracks: Coding exons are represented by blocks connected by horizontal lines representing introns. The 5' and 3' untranslated regions (UTRs) are displayed as thinner blocks on the leading and trailing ends of the aligning regions. In full display mode, arrowheads on the connecting intron lines indicate the direction of transcription. In situations where no intron is visible (e.g. single-exon genes, extremely zoomed-in displays), the arrowheads are displayed on the exon block itself.

Then whether its CLIP-Seq or ChIP-Seq, it shouldn't matter.

ADD COMMENT

Login before adding your answer.

Traffic: 1671 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6