Question: Comparing Duplicates in two transcriptome data sets
0
gravatar for kevluv93
3.8 years ago by
kevluv93150
United States
kevluv93150 wrote:

Lets say you have three transcriptomes taken from the same plant in three different conditions. You then got a list of differentially expressed genes for each of these conditions. You want to compare these lists to see how many genes are unique to one condition and how many genes are differentially expressed between condition AB, condition AC, BC and ABC. Something like figure 2 from this paper. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091055/

Is there a good program or way to do this? I've been googling excel tutorials for a while, and my experience with programming is minimal. Any advice? Thank you!

analysis gene expression • 1.1k views
ADD COMMENTlink modified 3.8 years ago by Biostar ♦♦ 20 • written 3.8 years ago by kevluv93150
2

i think in http://bioinfogp.cnb.csic.es/tools/venny/ you can find four parts to paste your conditions separately, then you can select the common parts as genes differentially expressed between conditions

ADD REPLYlink modified 3.8 years ago • written 3.8 years ago by F3.4k
1

Have you googled "venn diagram R"?

BTW, don't use Excel.

ADD REPLYlink modified 3.8 years ago • written 3.8 years ago by Devon Ryan89k

I have not, I'll go and do that right now. I try and avoid excel when I do transcriptome analysis, but I'm completely new to this so I end up constantly going back to it. Thanks for the help. Updates will come once I figure out how to do this

ADD REPLYlink written 3.8 years ago by kevluv93150
1

I'll save you some of the googling: Vennerable 

ADD REPLYlink written 3.8 years ago by Asaf5.5k
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