pangenome of mycobacterium
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5.6 years ago

hi everyone ,

I have to construct a pan genome  considering  65 strains of mycobcterium sp. , can anyone suggest what language will be more comfortable for this  job , either r or perl ??

and please suggest me a rough outline for consturcting pangenome .

blast sequence gene alignment • 970 views
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Kind of a broad question. Have you at all googled? This might help you; http://www.ncbi.nlm.nih.gov/pubmed/25781462

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5.6 years ago
HG ★ 1.1k

Hi If you have draft/close genome you can do it using LS_BSR  pipeline

https://github.com/jasonsahl/LS-BSR

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