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Question: pathway database KEGG and REACTOME
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gravatar for mittu1602
5.1 years ago by
mittu1602 • 180
India
mittu1602 • 180 wrote:

diffrence between kegg and reactome? in analysis? advantages and disadvantages?

 

 
pathway database • 3.2k views
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modified 5.0 years ago by onspotproductions • 140 • written 5.1 years ago by mittu1602 • 180

For what I have used it for I have found it to have more information as compared to reactome.

ADD REPLY • link written 5.0 years ago by onspotproductions • 140

It's time to give up KEGG since updated version can not be accessed publicly.

ADD REPLY • link written 2.2 years ago by Shicheng Guo • 8.5k
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gravatar for onspotproductions
5.0 years ago by
onspotproductions • 140
United States
onspotproductions • 140 wrote:

KEGG I have found to be more difficult to run enrichment analysis on, but I have found at least for my projects it contains a good deal more data than reactome. Reactome has a much better UI howeverthan KEGG and its built in search is definitely better.
ADD COMMENT • link written 5.0 years ago by onspotproductions • 140

Hi,

do you mean that KEGG is better and more exact than REACTME ???

ADD REPLY • link modified 13 months ago by _r_am ♦ 32k • written 5.0 years ago by winter_li • 60

Both KEGG and Reactome covers same number of genes ( example for human ~7000). The difference is KEGG has more broad term and Reactome has similar terms but as multiple detailed entries (splited terms for same entry from KEGG) .

This is the difference I found so far. Please correct me if I am wrong.

ADD REPLY • link written 5.0 years ago by EagleEye ♦ 6.7k
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